Repositories list

• SWAPS

  Public
  Scan-Wise Activation and Peak Selection (SWAPS)

  Jupyter Notebook

  •

  MIT License

  •0•3•0•1•Updated Feb 13, 2025Feb 13, 2025

• koina

  Public
  Democratizing ML in proteomics

  pythonmachine-learningbioinformatics+ 3deep-learningproteomicsmass-spectrometry

  Jupyter Notebook

  •

  Apache License 2.0

  •18•34•5•6•Updated Feb 12, 2025Feb 12, 2025

• dlomix

  Public
  Python framework for Deep Learning in Proteomics

  machine-learningframeworkdeep-learning+ 4proteomicsmass-spectrometrypeptidespeptide-sequences

  Jupyter Notebook

  •

  MIT License

  •10•23•2•2•Updated Feb 11, 2025Feb 11, 2025

• spectrum_fundamentals

  Public
  Fundamentals public repo

  Python

  •

  MIT License

  •2•9•1•4•Updated Feb 3, 2025Feb 3, 2025

• spectrum_io

  Public
  IO related functionalities for oktoberfest.

  Python

  •

  MIT License

  •4•2•1•3•Updated Feb 3, 2025Feb 3, 2025

• oktoberfest

  Public
  Rescoring and spectral library generation pipeline for proteomics.

  Python

  •

  MIT License

  •9•37•31•8•Updated Feb 3, 2025Feb 3, 2025

• dlomix-resources

  Public
  Jupyter Notebook

  •

  MIT License

  •3•2•0•0•Updated Jan 23, 2025Jan 23, 2025

• koinar

  Public
  Koina R client

  R

  •1•1•0•1•Updated Jan 9, 2025Jan 9, 2025

• rowwisenorm

  Public
  Row-wise normalization R package

  R

  •

  MIT License

  •0•0•0•0•Updated Sep 22, 2024Sep 22, 2024

• proteomicsdb-vue

  Public
  Vue

  •

  Apache License 2.0

  •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

• PROSPECT

  Public
  Proteomics Mass Spectrometry Datasets for Machine Learning

  spectrummachine-learningdeep-learning+ 10annotationsdatasetproteomicsmass-spectrometryptmpeptidesretention-time+ 3

  Python

  •

  MIT License

  •3•13•0•0•Updated Aug 16, 2024Aug 16, 2024

• biowc-core

  Public
  Core plotting web components

  Vue

  •

  Apache License 2.0

  •1•6•2•0•Updated Jun 18, 2024Jun 18, 2024

• omics_norm_shiny

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Dec 13, 2023Dec 13, 2023

• protvista-proteomicsdb

  Public archive
  JavaScript

  •0•0•0•0•Updated Aug 30, 2023Aug 30, 2023

• proteomicsdb-components

  Public archive
  Vue

  •0•0•0•0•Updated Aug 30, 2023Aug 30, 2023

• proteomicsdb-wrappers

  Public archive
  Vue

  •0•0•0•0•Updated Aug 30, 2023Aug 30, 2023

• proteomicsdb-views

  Public archive
  CSS

  •0•0•0•0•Updated Aug 30, 2023Aug 30, 2023

• prosit_grpc

  Public
  Public repo for prosit_grpc

  Python

  •

  MIT License

  •0•0•0•6•Updated May 11, 2023May 11, 2023