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    218 repositories

    • orthanc-builder

      Public
      Repo used to build osimis/orthanc docker images, windows installers and OSX packages
      Shell
      •
      GNU Affero General Public License v3.0
      •14•0•0•0•Updated Jan 31, 2025Jan 31, 2025

    • docs-gen3

      Public
      Repository for Public Gen3 Technical Documentation
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

    • BRH-documentation

      Public
      Official Documentation of the BRH Data Mesh
      3•1•0•6•Updated Jan 31, 2025Jan 31, 2025

    • gen3-frontend-framework

      Public
      A Frontend Framework for Gen3 data portals
      TypeScript
      •
      Apache License 2.0
      •6•2•0•15•Updated Jan 31, 2025Jan 31, 2025

    • gitops-qa

      Public
      gen3-gitops
      HTML
      •
      Apache License 2.0
      •7•2•0•182•Updated Jan 31, 2025Jan 31, 2025

    • data-portal

      Public
      Windmill: data portal for metadata submission and query
      gen3
      JavaScript
      •
      Apache License 2.0
      •45•29•43•17•Updated Jan 31, 2025Jan 31, 2025

    • cloud-automation

      Public
      Automation for standing up Gen3 commons
      gen3
      Shell
      •
      Apache License 2.0
      •68•41•99•94•Updated Jan 31, 2025Jan 31, 2025

    • gen3.org

      Public
      The website for gen3.org
      gen3
      HTML
      •
      Apache License 2.0
      •12•12•0•12•Updated Jan 31, 2025Jan 31, 2025

    • indexclient

      Public
      Prototype index service client.
      Python
      •
      Apache License 2.0
      •2•4•4•3•Updated Jan 31, 2025Jan 31, 2025

    • cdis-manifest

      Public
      Manifests tracking service versions to release to each environment
      HTML
      •
      Apache License 2.0
      •9•8•0•188•Updated Jan 31, 2025Jan 31, 2025

    • aws-es-proxy

      Public
      aws-es-proxy is a small web server application sitting between your HTTP client (browser, curl, etc...) and Amazon Elasticsearch service.
      Go
      •
      Apache License 2.0
      •203•1•0•15•Updated Jan 31, 2025Jan 31, 2025

    • hatchery

      Public
      hacktoberfestgen3
      Go
      •
      Apache License 2.0
      •4•7•0•6•Updated Jan 31, 2025Jan 31, 2025

    • sower

      Public
      Job dispatcher for Kubernetes
      gen3
      Go
      •
      Apache License 2.0
      •1•4•0•0•Updated Jan 31, 2025Jan 31, 2025

    • ssjdispatcher

      Public
      SQS S3 Job Dispatcher
      Go
      •
      Apache License 2.0
      •5•3•0•0•Updated Jan 31, 2025Jan 31, 2025

    • sheepdog

      Public
      API for herding data submissions
      gen3
      Python
      •
      Apache License 2.0
      •17•11•22•18•Updated Jan 31, 2025Jan 31, 2025

    • Viewers

      Public
      OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
      TypeScript
      •
      MIT License
      •3.5k•1•0•41•Updated Jan 31, 2025Jan 31, 2025

    • gen3-igv

      Public
      IGV Web App
      JavaScript
      •
      MIT License
      •44•1•0•3•Updated Jan 31, 2025Jan 31, 2025

    • bih-data-commons

      Public
      BIH Data Commons using Gen3.2
      TypeScript
      •
      Apache License 2.0
      •17•2•0•8•Updated Jan 31, 2025Jan 31, 2025

    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Smarty
      •
      Apache License 2.0
      •25•11•2•11•Updated Jan 31, 2025Jan 31, 2025

    • manifestservice

      Public
      create and read manifests from s3
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Jan 31, 2025Jan 31, 2025

    • gen3-community

      Public
      Repo for creating issues and feature requests for the Gen3 Data Platform
      Apache License 2.0
      •0•2•0•1•Updated Jan 31, 2025Jan 31, 2025

    • gen3-auspice

      Public
      Web app for visualizing pathogen evolution
      JavaScript
      •
      GNU Affero General Public License v3.0
      •162•0•0•48•Updated Jan 31, 2025Jan 31, 2025

    • gen3-augur

      Public
      Python CLI for data utils
      Python
      •
      Apache License 2.0
      •1•0•0•6•Updated Jan 31, 2025Jan 31, 2025

    • docker-nginx

      Public
      Official NGINX Dockerfiles
      Shell
      •
      BSD 2-Clause "Simplified" License
      •1.7k•0•0•2•Updated Jan 31, 2025Jan 31, 2025

    • midrc_dictionary

      Public
      A data dictionary for the Medical Imaging Resource Data Commons (MIDRC).
      Python
      •
      Apache License 2.0
      •5•5•0•0•Updated Jan 31, 2025Jan 31, 2025

    • cohort-middleware

      Public
      Middleware to work with Atlas cohorts in Gen3
      vadc
      Go
      •
      Apache License 2.0
      •1•0•0•8•Updated Jan 31, 2025Jan 31, 2025

    • vadc-data-commons

      Public template
      VADC Gen3 Data Commons repository for gen3 frontend framework
      JavaScript
      •
      Apache License 2.0
      •17•0•0•3•Updated Jan 31, 2025Jan 31, 2025

    • covid19model

      Public
      Code for modelling estimated deaths and cases for COVID19.
      R
      •
      MIT License
      •271•0•0•3•Updated Jan 31, 2025Jan 31, 2025

    • covid-bioinformatics

      Public
      Software tools to collect and analyze Coronavirus sequences using HMMs
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Jan 31, 2025Jan 31, 2025

    • commons-sample-data

      Public
      A repo to track various TOPMed and other datasets
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Jan 31, 2025Jan 31, 2025