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    39 repositories

    • FlxQTL.jl

      Public
      A comprehensive QTL analysis tool by multivariate linear mixed model.
      qtlmklintel-hardwareqtl-analysisjulia
      Julia
      •
      GNU General Public License v3.0
      •7•4•0•0•Updated Feb 1, 2025Feb 1, 2025

    • mlm-metabolomics-supplement

      Public
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •2•0•0•0•Updated Jan 31, 2025Jan 31, 2025

    • MatrixLM.jl

      Public
      Core functions to obtain closed-form least squares estimates for matrix linear models.
      Jupyter Notebook
      •
      Other
      •4•1•3•0•Updated Jan 22, 2025Jan 22, 2025

    • BigRiverQTL.jl

      Public
      A Statistical Toolbox for QTL Analysis
      Julia
      •
      GNU Affero General Public License v3.0
      •3•2•1•0•Updated Aug 26, 2024Aug 26, 2024

    • MatrixLMnet.jl

      Public
      Core functions to obtain L1-L2 penalized estimates for matrix linear models.
      Julia
      •
      Other
      •4•3•1•0•Updated Aug 3, 2024Aug 3, 2024

    • BulkLMM.jl

      Public
      Linear mixed model genome scans for many traits
      bioinformaticsgeneticslmm
      Julia
      •
      GNU Affero General Public License v3.0
      •5•4•7•0•Updated Jun 14, 2024Jun 14, 2024

    • senresearch.github.io

      Public
      Sen Research Group Website
      0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • WolfRiverPlots.jl

      Public
      Julia
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • LiteQTL.jl

      Public
      A lightweight Julia package for eQTL genome scans near real-time.
      gpu-computingeqtlgenome-scanlinearmodeljulia
      Jupyter Notebook
      •
      MIT License
      •2•3•0•3•Updated Nov 8, 2023Nov 8, 2023

    • GeneNetworkAPI.jl

      Public
      Julia interface for GeneNetwork REST API
      apigenenetworkjulia
      Julia
      •
      GNU Affero General Public License v3.0
      •3•7•4•0•Updated Nov 7, 2023Nov 7, 2023

    • BigRiverQTLPlots.jl

      Public
      Julia
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • BulkLMMSysimage

      Public
      Julia
      •
      GNU Affero General Public License v3.0
      •2•0•0•0•Updated Jun 7, 2023Jun 7, 2023

    • ENAR2023JuliaWorkshop

      Public
      Jupyter Notebook
      •
      Other
      •1•1•0•0•Updated Jun 1, 2023Jun 1, 2023

    • SAMSstudypreprocessing

      Public
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated May 4, 2023May 4, 2023

    • MLM-metabolomic-study

      Public
      HTML
      •
      MIT License
      •1•0•0•0•Updated Jan 18, 2023Jan 18, 2023

    • GNDemo

      Public
      Julia
      •
      MIT License
      •0•0•0•0•Updated Dec 14, 2022Dec 14, 2022

    • MetabolomicsWorkbenchAPI.jl

      Public
      Julia
      •
      GNU General Public License v3.0
      •2•5•0•0•Updated Oct 26, 2022Oct 26, 2022

    • AccelerometerDataProcessing

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 25, 2022May 25, 2022

    • FlxQTL-SI

      Public
      Julia
      •1•1•0•0•Updated Mar 20, 2022Mar 20, 2022

    • quant-genetics-webinars

      Public
      Quantitative Genetics Tools for Mapping Trait Variation to Mechanisms, Therapeutics, and Interventions - Webinar Series
      Jupyter Notebook
      •14•1•0•0•Updated Jan 17, 2022Jan 17, 2022

    • lcest

      Public
      R
      •0•0•0•0•Updated Jan 14, 2022Jan 14, 2022

    • Helium.jl

      Public
      A fast and flexible Julia tabular data serialization format.
      juliareadtabular-datawriteserialization-format
      Julia
      •
      MIT License
      •1•2•1•0•Updated Jan 13, 2022Jan 13, 2022

    • julia-intro-docs

      Public
      Jupyter Notebook
      •2•2•0•1•Updated Nov 18, 2021Nov 18, 2021

    • dietappstudy

      Public
      HTML
      •
      MIT License
      •0•1•0•0•Updated Jun 30, 2021Jun 30, 2021

    • visuals

      Public
      Julia
      •3•1•0•0•Updated May 14, 2021May 14, 2021

    • LiteQTL-G3-supplement

      Public
      Jupyter Notebook
      •1•1•0•0•Updated May 6, 2021May 6, 2021

    • tensorqtl

      Public
      Ultrafast GPU-based QTL mapper
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •53•0•0•0•Updated Apr 28, 2021Apr 28, 2021

    • GeneticScreens.jl

      Public
      Pre- and post-processing for the analysis of high-throughput genetic screens using matrix linear models.
      Julia
      •
      Other
      •0•0•0•0•Updated Feb 20, 2021Feb 20, 2021

    • FaSTLMM.jl

      Public
      Julia implementation of Factored Spectrally Transformed Linear Mixed Models
      Julia
      •
      GNU Affero General Public License v3.0
      •5•0•0•0•Updated Feb 13, 2021Feb 13, 2021

    • mlm_gs_supplement

      Public
      Reproduce the results presented in the paper "Matrix linear models for high-throughput chemical genetic screens".
      Julia
      •0•0•0•0•Updated Feb 12, 2021Feb 12, 2021