Repositories list

• realtime-dbs

  Public
  SeaFlow realtime analysis parameter databases

  MIT License

  •1•0•0•0•Updated Dec 31, 2024Dec 31, 2024

• seaflow-web

  Public
  TeX

  •

  MIT License

  •0•0•0•0•Updated Dec 29, 2024Dec 29, 2024

• seaflowpy

  Public
  Python package with library and CLI tool for analyzing SeaFlow data

  pythonreproducible-researchoceanography+ 2flow-cytometryseaflow

  Python

  •

  GNU General Public License v3.0

  •3•5•1•0•Updated Dec 12, 2024Dec 12, 2024

• popcycle

  Public
  Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow

  reproducible-researchoceanographyflow-cytometry+ 3phytoplanktonworkflowseaflow

  R

  •

  MIT License

  •8•9•8•0•Updated Dec 12, 2024Dec 12, 2024

• fsc-poc-calibration

  Public
  Conversion from light scattering measured by SeaFlow to carbon per cell

  reproducible-researchflow-cytometryseaflow+ 2carbon-quotaslight-scatter-measurements

  R

  •

  MIT License

  •0•1•0•0•Updated Nov 21, 2024Nov 21, 2024

• flowkernel-project

  Public
  R

  •2•0•0•0•Updated Aug 10, 2024Aug 10, 2024

• mpm-workflow

  Public
  SeaFlow matrix population model workflow

  Python

  •

  MIT License

  •0•1•0•0•Updated Jun 14, 2024Jun 14, 2024

• seaflow-sfl

  Public
  SFL files contain metadata for each SeaFlow files recorded during the cruise. These metadata are provided by the ship's data broadcast system and are being copied to the SeaFlow instrument as is.

  reproducible-researchseaflowcruise+ 2ship-dataseaflow-instrument

  HTML

  •

  MIT License

  •2•2•0•1•Updated Jan 26, 2024Jan 26, 2024

• seaflow-filter

  Public
  reproducible-researchseaflow

  R

  •

  MIT License

  •1•0•0•0•Updated Jan 26, 2024Jan 26, 2024

• seaflow-virtualcore

  Public
  Calibration of SeaFlow's Virtual Core

  reproducible-researchflow-cytometryseaflow

  R

  •

  MIT License

  •0•1•0•0•Updated Jan 8, 2024Jan 8, 2024

• seaflog

  Public
  Command-line tool and Go library for parsing SeaFlow instrument v1 log files

  Go

  •

  MIT License

  •0•0•0•0•Updated Jan 4, 2024Jan 4, 2024

• SeaFlow_cruise_report

  Public
  knitR and supporting documents to build an R and LaTeX cruise report for SeaFlow data.

  TeX

  •1•1•0•0•Updated Oct 17, 2023Oct 17, 2023

• flowmix

  Public
  Statistical analysis of ocean flow cytometry data.

  HTML

  •3•0•0•0•Updated Aug 30, 2022Aug 30, 2022

• bayesian-matrix-population-model

  Public
  A Bayesian approach to size-structured matrix population model to estimate daily rates of phytoplankton cell division, growth and respiration

  Jupyter Notebook

  •

  MIT License

  •2•0•0•0•Updated Nov 19, 2021Nov 19, 2021

• cytosegmenter

  Public
  Code accompanying the paper "A Kernel-Based Change Detection Method to Map Shifts in Phytoplankton Communities Measured by Flow Cytometry"

  Python

  •

  MIT License

  •1•0•0•0•Updated Sep 1, 2021Sep 1, 2021

• fsc-size-calibration

  Public
  Conversion from light scattering measured by SeaFlow to cell diameter

  reproducible-researchflow-cytometryseaflow+ 2cell-diameterscattering-measurements

  R

  •

  MIT License

  •0•3•0•0•Updated Aug 5, 2020Aug 5, 2020