Repositories list

• DrugRepurposing

  Public
  R

  •0•0•0•0•Updated May 20, 2024May 20, 2024

• SelectionGeneDrives

  Public
  R

  •0•2•0•0•Updated Mar 19, 2024Mar 19, 2024

• goloco

  Public
  A bioinformatics web application designed to enable genome-wide CRISPR loss-of-function inferences with compressed sgRNA subsets powered by information embedded in biological networks that exploit functional relationships between genes.

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 21, 2024Feb 21, 2024

• cga_app

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated May 18, 2022May 18, 2022

• ABMResistanceEvolution

  Public
  Roff

  •0•0•0•0•Updated Feb 18, 2022Feb 18, 2022

• cga

  Public
  CERES predictions based on functional and genomic features

  Jupyter Notebook

  •

  MIT License

  •2•0•0•0•Updated Jan 14, 2022Jan 14, 2022

• NMDcyt

  Public
  R source code, outputs, and datasets for NMD-cytolytic immune infiltration paper (Zhao and Pritchard, PLoS Compt Biol, 2019)

  HTML

  •2•0•0•0•Updated Nov 14, 2021Nov 14, 2021

• pairwisecomparisons

  Public
  HTML

  •0•0•0•0•Updated Oct 21, 2021Oct 21, 2021

• cx5461

  Public
  HTML

  •0•0•0•0•Updated Jan 27, 2020Jan 27, 2020

• PredictiveResistanceEvolution

  Public
  HTML

  •0•0•0•0•Updated Dec 7, 2019Dec 7, 2019

• PredictiveEvolution

  Public
  Multi-scale predictions of drug resistance epidemiology suggest a new design principle for rational drug design.

  R

  •1•1•0•0•Updated Jul 26, 2019Jul 26, 2019

• SurvivalOfTheLikeliest

  Public
  Exploiting the "survival of the likeliest" to enable evolution-guided drug design

  HTML

  •0•0•0•0•Updated Mar 27, 2019Mar 27, 2019