Repositories list

• open-pedigree

  Public
  A free and open-source pedigree tool by PhenoTips®

  family-treepedigreefamily-history+ 1genogram

  JavaScript

  •

  GNU Lesser General Public License v2.1

  •25•46•13•10•Updated Jan 10, 2024Jan 10, 2024

• variant-store

  Public archive
  No longer maintained - A Java library that wraps the complexity of storing and querying large numbers of genomic variants

  Java

  •

  GNU Affero General Public License v3.0

  •2•3•0•0•Updated May 10, 2022May 10, 2022

• phenotips

  Public archive
  The open-source version of PhenoTips is no longer maintained. PhenoTips makes it simple to record clinical findings observed in patients with possible genetic disorders through an easy-to-use Web interface

  hpophenotipspatients+ 1java

  Java

  •

  GNU Affero General Public License v3.0

  •62•102•7•0•Updated May 3, 2022May 3, 2022

• build-tools

  Public
  Build tools for the PhenoTips project

  MATLAB

  •

  GNU Affero General Public License v3.0

  •2•1•0•0•Updated Dec 14, 2021Dec 14, 2021

• xwiki-rendering

  Public
  The XWiki Rendering Engine

  Java

  •

  GNU Lesser General Public License v2.1

  •79•0•0•0•Updated Jun 11, 2021Jun 11, 2021

• patient-network

  Public
  Patient matching extension for PhenoTips

  Java

  •

  GNU Affero General Public License v3.0

  •6•3•10•3•Updated Mar 23, 2021Mar 23, 2021

• xwiki-enterprise

  Public
  Java

  •

  GNU Lesser General Public License v2.1

  •103•0•0•0•Updated Oct 13, 2020Oct 13, 2020

• xwiki-commons

  Public
  Common Modules used by other XWiki top level projects

  Java

  •

  GNU Lesser General Public License v2.1

  •124•0•0•0•Updated Oct 13, 2020Oct 13, 2020

• xwiki-platform

  Public
  The XWiki platform

  Java

  •551•0•0•0•Updated Oct 7, 2020Oct 7, 2020

• phenotips-test-ci

  Public
  Test repo for CI/workflows

  Java

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Aug 25, 2020Aug 25, 2020

• phenomecentral.org

  Public
  The phenomecentral.org website

  JavaScript

  •

  GNU Affero General Public License v3.0

  •8•2•13•3•Updated Jul 21, 2020Jul 21, 2020

• remote-matching

  Public
  Patient matching across applications

  Java

  •2•2•6•1•Updated Jul 21, 2020Jul 21, 2020

• grappa

  Public
  Fork of the AT&T Grappa project, a port of a subset of GraphViz to Java

  Java

  •

  Other

  •6•10•0•1•Updated Feb 10, 2020Feb 10, 2020

• deployment-tools

  Public
  PhenomeCentral test deployment tools for customised test buld deployments

  Python

  •

  GNU Affero General Public License v3.0

  •0•1•1•0•Updated Dec 5, 2019Dec 5, 2019

• care-pathways

  Public
  Java

  •

  GNU Affero General Public License v3.0

  •0•1•0•0•Updated May 16, 2019May 16, 2019

• pingback

  Public
  Java

  •2•1•0•0•Updated May 13, 2019May 13, 2019

• pt-farm-server

  Public
  For internal use only. Server config to run several PhenoTips instances.

  Shell

  •1•2•0•0•Updated Feb 4, 2019Feb 4, 2019

• clinical-text-analysis-extension

  Public
  An extension for Phenotips to extract HPO terms from free text.

  Java

  •7•1•13•1•Updated Dec 19, 2018Dec 19, 2018

• phenotips-functional-tests-framework

  Public
  Various tools used for running integration/functional tests for PhenoTips

  Java

  •

  GNU Affero General Public License v3.0

  •1•0•0•0•Updated Nov 15, 2018Nov 15, 2018

• phenotips.org

  Public archive
  The phenotips.org website - no longer active

  Shell

  •

  GNU Lesser General Public License v2.1

  •2•0•0•0•Updated Jul 21, 2018Jul 21, 2018

• clone-application

  Public
  Allows maintaining a one-way clone of all the patient

  Java

  •1•0•1•0•Updated Feb 7, 2018Feb 7, 2018

• ontologizer

  Public archive
  No longer maintained. An Open Source tool with the purpose of identifying enriched Gene Ontology terms in lists of names of genes or gene products

  Java

  •1•1•0•0•Updated Jan 19, 2018Jan 19, 2018

• mendelian-search-application

  Public
  Java

  •0•1•5•0•Updated Dec 1, 2017Dec 1, 2017

• lims247-integration

  Public
  Integrates PhenoTips into RURO's LIMS 24/7

  Java

  •1•0•0•0•Updated Dec 1, 2017Dec 1, 2017

• phenotips_python_client

  Public
  Python client to the phenotips API

  Python

  •1•2•0•0•Updated Mar 24, 2017Mar 24, 2017

• termrequester

  Public archive
  No longer maintained.

  Java

  •1•0•0•0•Updated Feb 2, 2017Feb 2, 2017

• app-phenotips

  Public
  BIBBOX phenotips application

  Shell

  •2•0•0•0•Updated Oct 14, 2016Oct 14, 2016

• angularjs-demo

  Public
  0•0•0•0•Updated May 17, 2016May 17, 2016

• boqa

  Public archive
  No longer maintained. PhenoTips fork of the Bayesian Ontology Query Algorithm (BOQA) implementation

  Java

  •

  BSD 3-Clause Clear License

  •3•3•0•0•Updated Jan 15, 2016Jan 15, 2016

• variant-store-application

  Public
  Java

  •0•0•5•0•Updated Nov 10, 2015Nov 10, 2015