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    19 repositories

    • openresearchlabs.github.io

      Public
      Website for Open Research Labs
      TeX
      •15•2•7•0•Updated Jan 28, 2025Jan 28, 2025

    • Kumaraswamy2024

      Public
      Indian gut microbiome study on fermented foods with HITChip
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • workflow_metagenome

      Public
      Create example exercise for workflow pipeline in Puhti (csc supercomputer) for metagenome analysis
      Shell
      •1•0•0•0•Updated Mar 28, 2024Mar 28, 2024

    • STPP

      Public archive
      Material for the Data Carpentry course Statistical and Probabilistic Programming
      R
      •
      Other
      •0•0•0•0•Updated Jun 13, 2023Jun 13, 2023

    • FdeSolver.jl

      Public
      FdeSolver.jl: A Julia package for the numerical solution of fractional differential equations (FDEs) as well as systems of equations.
      Julia
      •
      Other
      •3•0•0•0•Updated Oct 7, 2022Oct 7, 2022

    • article_2022_khalighi_memory_effects

      Public
      MATLAB
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated May 18, 2022May 18, 2022

    • Tools-Microbiome-Analysis

      Public
      A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
      HTML
      •46•0•0•0•Updated Apr 19, 2021Apr 19, 2021

    • slides_microbiome

      Public
      Slides
      HTML
      •0•1•0•0•Updated Sep 20, 2020Sep 20, 2020

    • HITChipDB

      Public
      HITChip Database functions
      R
      •
      Other
      •0•2•0•0•Updated Jun 3, 2020Jun 3, 2020

    • scripts

      Public
      Script utilities
      TeX
      •0•0•0•0•Updated Jun 26, 2019Jun 26, 2019

    • labmanual

      Public
      Lab Manual for the Aly Lab at Columbia University
      16•0•0•0•Updated Oct 31, 2018Oct 31, 2018

    • devel

      Public
      Development code
      R
      •0•0•0•0•Updated Aug 22, 2018Aug 22, 2018

    • sandbox

      Public
      Testing repo
      MIT License
      •0•0•0•0•Updated May 19, 2018May 19, 2018

    • HITdb

      Public
      Human Intestinal 16S rRNA gene reference taxonomy
      1•4•0•0•Updated Dec 29, 2016Dec 29, 2016

    • biopax2

      Public archive
      R
      •0•0•0•0•Updated Jul 6, 2015Jul 6, 2015

    • earlywarningtoolbox

      Public
      Shell
      •2•1•0•0•Updated Jun 18, 2015Jun 18, 2015

    • Illumina_16S_pre-processing

      Public archive
      R functions utilizing Usearch for Illumina 16S amplicon reads pre-preocessing
      R
      •3•2•0•0•Updated Apr 21, 2015Apr 21, 2015

    • data

      Public archive
      Data utilities
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Nov 19, 2013Nov 19, 2013

    • d3

      Public
      D3 examples
      JavaScript
      •0•0•0•0•Updated Oct 30, 2013Oct 30, 2013