Open Problems in Single-Cell Analysis

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30 packages

control_methods/zeros
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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control_methods/sample
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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control_methods/ground_truth
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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control_methods/mean_outcome
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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methods/scape
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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control_methods/mean_across_compounds
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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process_dataset/generate_id_map
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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methods/lgc_ensemble_predict
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

6
methods/jn_ap_op2
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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methods/pyboost
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

6
control_methods/mean_across_celltypes
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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methods/nn_retraining_with_pseudolabels
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

6
methods/lgc_ensemble_prepare
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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grn_methods/scenic
Published Sep 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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grn_methods/genie3
Published Aug 29, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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batch_integration/methods/scalex_feature
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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dataset_loaders/download_singlecell_broadinstitute_dataset
Published Jun 26, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cell_cell_communication

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common/process_task_results/get_results
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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common/process_task_results/get_metric_info
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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common/process_task_results/get_method_info
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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common/process_task_results/get_dataset_info
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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common/process_task_results/generate_qc
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

4
common/process_task_results/get_task_info
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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perturbation/normalization
Published Aug 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

4
datasets/processors/subsample
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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process_dataset/convert_h5ad_to_parquet
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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process_dataset/convert_kaggle_h5ad_to_parquet
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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methods/lgc_ensemble_direct
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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common/create_component
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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dataset_loaders/infer_truth
Published Jun 26, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cell_cell_communication

3