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    • Notebooks for MBL GERN 2024
      Jupyter Notebook
      GNU Affero General Public License v3.0
      1204Updated Oct 18, 2024Oct 18, 2024
    • James Briscoe notebooks for MBL GERN 2024 - dynamical systems view of gene regulatory networks
      Jupyter Notebook
      0000Updated Oct 9, 2024Oct 9, 2024
    • Using Jupyter Notebooks to implement a Monte Carlo approach to the Monty Hall problem
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      1121Updated Oct 6, 2024Oct 6, 2024
    • RNAseq stuff for 201b
      HTML
      0100Updated Sep 27, 2024Sep 27, 2024
    • Shell
      Creative Commons Zero v1.0 Universal
      1100Updated Apr 29, 2024Apr 29, 2024
    • Class materials for GGG 298, Tools for Data Intensive Research, WQ 2024 @ UC Davis.
      R
      0200Updated Mar 13, 2024Mar 13, 2024
    • 0100Updated Mar 8, 2024Mar 8, 2024
    • 2024-ggg-201b-hw1-slvanburen created by GitHub Classroom
      Python
      BSD 3-Clause "New" or "Revised" License
      0001Updated Feb 19, 2024Feb 19, 2024
    • Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Feb 9, 2024Feb 9, 2024
    • 2024-ggg-201b-hw1

      Public template
      HW #1 - variant calling
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Feb 9, 2024Feb 9, 2024
    • Python
      0100Updated Jan 26, 2024Jan 26, 2024
    • 2024-ggg-201b-hw0

      Public template
      0000Updated Jan 15, 2024Jan 15, 2024
    • A DRAFT, early stage book on snakemake.
      Python
      017221Updated Nov 1, 2023Nov 1, 2023
    • 0100Updated Oct 4, 2023Oct 4, 2023
    • HTML
      8400Updated Oct 4, 2023Oct 4, 2023
    • Workshop schedule & ancillary information for June 2023 DataLab Collaboratory
      Creative Commons Zero v1.0 Universal
      0480Updated Jun 25, 2023Jun 25, 2023
    • Scripts and config for setting up a shared conda package space on farm.cse.ucdavis.edu
      Shell
      BSD 3-Clause "New" or "Revised" License
      0120Updated Apr 17, 2023Apr 17, 2023
    • 0000Updated Apr 13, 2023Apr 13, 2023
    • Class materials for GGG 298, Tools for Data Intensive Research, WQ 2023 UC Davis.
      1300Updated Mar 15, 2023Mar 15, 2023
    • A simple example snakemake workflow
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      23110Updated Mar 15, 2023Mar 15, 2023
    • 2023-ggg-201b-lab-hw2

      Public template
      Python
      0000Updated Mar 13, 2023Mar 13, 2023
    • Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Mar 3, 2023Mar 3, 2023
    • Examples and foo for week 6 - small exercises, faded examples, etc.
      0000Updated Feb 15, 2023Feb 15, 2023
    • 2023-ggg-201b-lab-hw1

      Public template
      Python
      0000Updated Feb 10, 2023Feb 10, 2023
    • Python
      0000Updated Feb 10, 2023Feb 10, 2023
    • angus

      Public
      Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
      HTML
      Creative Commons Zero v1.0 Universal
      129105183Updated Jan 21, 2023Jan 21, 2023
    • GGG 201(b), Intro to Bioinformatics - lab section. Winter 2022 at UC Davis.
      Jupyter Notebook
      Creative Commons Zero v1.0 Universal
      2200Updated Mar 14, 2022Mar 14, 2022
    • 2022-rnaseq-cloud

      Public template
      HTML
      0000Updated Mar 11, 2022Mar 11, 2022
    • Winter 2022 - Tools for Data Intensive Research at UC Davis.
      Python
      Creative Commons Zero v1.0 Universal
      2400Updated Mar 9, 2022Mar 9, 2022
    • 2022-ggg-201b-hw2

      Public template
      Python
      0000Updated Feb 19, 2022Feb 19, 2022