Skip to content

@modsim Modeling & Simulation (IBG-1)

Change the repository type filter

All

    Repositories list

    42 repositories

    • FluxML

      Public
      A Universal Modeling Language for Metabolic Flux Analysis
      modeling-languagespecification-languagemetabolic-modelsmetabolic-networkmetabolic-engineeringmetabolic-flux-analysis13c-mfa
      C++
      •
      MIT License
      •6•10•15•1•Updated Dec 13, 2024Dec 13, 2024

    • hopsy

      Public
      Python interface to C++ sampling library HOPS
      C++
      •
      MIT License
      •3•12•2•0•Updated Dec 11, 2024Dec 11, 2024

    • hops

      Public
      Highly Optimized Polytope Sampling
      C++
      •
      MIT License
      •0•13•0•0•Updated Sep 17, 2024Sep 17, 2024

    • DNest4

      Public
      Diffusive Nested Sampling
      C++
      •
      MIT License
      •22•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • ChromaHD-chromoo

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 24, 2024Aug 24, 2024

    • ChromaHD-scripts

      Public
      Python
      •0•0•0•0•Updated Jul 13, 2024Jul 13, 2024

    • ChromaHD-mixdtools

      Public
      C++
      •0•0•0•0•Updated Mar 29, 2024Mar 29, 2024

    • ChromaHD-paravision

      Public
      Python
      •0•0•0•0•Updated Mar 24, 2024Mar 24, 2024

    • ChromaHD-pymesh

      Public
      Python
      •0•0•0•0•Updated Jan 20, 2024Jan 20, 2024

    • margss

      Public
      Sampling Genome-scale models as a service
      JavaScript
      •0•0•1•21•Updated Jan 9, 2024Jan 9, 2024

    • bug_report_example

      Public
      Template for reporting bugs including code and data
      Python
      •2•0•0•1•Updated Aug 11, 2023Aug 11, 2023

    • hopsy-staged-recipe

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5k•0•0•0•Updated Jul 14, 2023Jul 14, 2023

    • uNAC-staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5k•0•0•0•Updated Jun 23, 2023Jun 23, 2023

    • CellSium

      Public
      CellSium – Cell Simulator for microfluidic microcolonies
      Python
      •
      BSD 2-Clause "Simplified" License
      •2•2•0•0•Updated Jun 2, 2023Jun 2, 2023

    • ChromaHD-genmesh

      Public
      C++
      •0•0•0•0•Updated Apr 29, 2023Apr 29, 2023

    • junn

      Public
      WIP: JUNN – Jülich U-Net Neural Network
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jun 30, 2021Jun 30, 2021

    • SurEmCo

      Public
      Superresolution Emitter Counter Analysis Software
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Apr 28, 2021Apr 28, 2021

    • 1315N_abundance_correction

      Public
      redirect to the correct page
      0•0•0•0•Updated Mar 18, 2021Mar 18, 2021

    • mycelyso

      Public
      MYCEelium anaLYsis SOftware
      pythonbioinformaticsimage-analysismicrofluidicsmycelium
      Python
      •
      BSD 2-Clause "Simplified" License
      •3•2•1•0•Updated Mar 6, 2021Mar 6, 2021

    • molyso

      Public
      molyso - Mother Machine Analysis Software
      pythonbioinformaticsimage-analysismicrofluidicsmother-machine
      Python
      •
      BSD 2-Clause "Simplified" License
      •3•9•3•0•Updated Mar 6, 2021Mar 6, 2021

    • pilyso-io-omero

      Public
      Python Image anaLYsis SOftware library - Input / Output - OMERO plugin
      Python
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Mar 5, 2021Mar 5, 2021

    • pilyso-io

      Public
      Python Image anaLYsis SOftware library - Input / Output
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Mar 5, 2021Mar 5, 2021

    • mycelyso-inspector

      Public
      MYCEelium anaLYsis SOftware - Inspector
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Feb 17, 2021Feb 17, 2021

    • OCDES

      Public
      OCDE Simulator
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 14, 2020Jul 14, 2020

    • 13C15N_abundance_correction

      Public
      Correction method as described in https://doi.org/10.1021/acs.analchem.9b01788
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 18, 2019Oct 18, 2019

    • himics

      Public
      HiMiCs – High Throughput Microfluidic Single Cell Analysis
      0•0•0•0•Updated Nov 14, 2018Nov 14, 2018

    • MooViE

      Public
      Multi-objective optimization Visualization Engine
      0•1•0•0•Updated Sep 15, 2017Sep 15, 2017

    • KriKit

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •2•8•0•0•Updated May 2, 2017May 2, 2017

    • jungle-calibration

      Public
      Java
      •0•0•0•0•Updated Apr 22, 2017Apr 22, 2017

    • jungle-ij1-macros

      Public
      0•0•0•0•Updated Apr 22, 2017Apr 22, 2017