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    79 repositories

    • neuralgbi_diffusion

      Public
      Richard @rdgao & Michael @michaeldeistler: using neural network-based regression and density estimation for Generalized Bayesian Inference
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • sequence-memory

      Public
      Code for Liebe et al. "Phase of firing does not reflect temporal order in sequence memory of humans and recurrent neural networks", code by Matthijs Pals (@Matthijspals)
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Oct 7, 2024Oct 7, 2024

    • epiphyte

      Public
      Python toolkit for working with high-dimensional neural data recorded during naturalistic, continuous stimuli @a-darcher @rachrapp
      pythondockermoviesdatabasetoolboxdata-analysisdata-pipelinesdatajointmeta-dataepiphyte
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•7•0•0•Updated Sep 13, 2024Sep 13, 2024

    • automind

      Public
      Automated Model Inference from Neural Dynamics
      Jupyter Notebook
      •
      Apache License 2.0
      •1•4•0•0•Updated Sep 9, 2024Sep 9, 2024

    • neural_timeseries_diffusion

      Public
      This repository contains research code for the paper "Generating realistic neurophysiological time series with denoising diffusion probabilistic models".
      Python
      •
      MIT License
      •6•64•1•0•Updated Aug 30, 2024Aug 30, 2024

    • sourcerer

      Public
      Code for the preprint "Sourcerer: Sample-based Maximum Entropy Source Distribution Estimation"
      Python
      •
      MIT License
      •1•1•0•0•Updated Aug 28, 2024Aug 28, 2024

    • .github

      Public
      Repo for mackelab github landing page, maintained by @michaeldeistler
      0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • jaxley_experiments

      Public
      Repository to reproduce results of `Differentiable simulation enables large-scale training of biophysical models of neural dynamics`.
      Jupyter Notebook
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      MIT License
      •1•0•1•0•Updated Aug 20, 2024Aug 20, 2024

    • sbi-ves

      Public
      Simulation-Based Inference of Soil Resistivitiy from Vertical Electrical Sounding combined with a Web Application for web-based inversion
      Jupyter Notebook
      •1•0•0•0•Updated Aug 6, 2024Aug 6, 2024

    • smc_rnns

      Public
      Code accompanying Inferring stochastic low-rank RNNs from neural data. @Matthijspals
      Jupyter Notebook
      •
      Apache License 2.0
      •1•12•0•0•Updated Jul 27, 2024Jul 27, 2024

    • simulation_based_model_inference

      Public
      Repository for the paper "Simultaneous identification of models and parameters of scientific simulators" -- Cornelius: @coschroeder
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jul 18, 2024Jul 18, 2024

    • LDNS

      Public
      MIT License
      •0•1•0•0•Updated Jun 25, 2024Jun 25, 2024

    • gp-maps-python

      Public
      Gaussian process method for inferring cortical maps (Python version), code by Dominik Straub @dominikstrb
      machine-learningcomputational-neuroscience
      Python
      •
      GNU General Public License v3.0
      •2•2•0•1•Updated Jun 17, 2024Jun 17, 2024

    • simformer

      Public
      Combination of transformers and diffusion models for flexible all-in-one simulation-based inference
      Jupyter Notebook
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      MIT License
      •4•42•0•0•Updated Jun 17, 2024Jun 17, 2024

    • sbi-ice

      Public
      Simulation-Based Inference of Surface Accumulation and Basal Melt Rates of an Antarctic Ice Shelf from Isochronal Layers
      Python
      •
      GNU Affero General Public License v3.0
      •0•1•3•0•Updated Jun 10, 2024Jun 10, 2024

    • labproject

      Public
      Labproject about comparing distributions metrics by @mackelab
      Python
      •
      MIT License
      •0•3•13•0•Updated Jun 6, 2024Jun 6, 2024

    • preprocessing-ice-data

      Public
      Simulation-Based Inference of Surface Accumulation and Basal Melt Rates of an Antarctic Ice Shelf from Isochronal Layers
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Jun 3, 2024Jun 3, 2024

    • phase-limit-cycle-RNNs

      Public
      Code for "Trained recurrent neural networks develop phase-locked limit cycles in a working memory task" - Matthijs Pals (@Matthijspals) , Jakob Macke and Omri Barak.
      Python
      •
      Apache License 2.0
      •2•5•0•0•Updated May 22, 2024May 22, 2024

    • amortized-decision-making

      Public
      Repository for the paper "Amortized Bayesian Decision Making for simulation-based models" - Mila @milagorecki and Michael @michaeldeistler
      Jupyter Notebook
      •0•3•0•0•Updated May 21, 2024May 21, 2024

    • grassmann_binary_distribution

      Public
      Implementation of binary distribution in the Grassmann formalism, including conditional version. Main contributor: Cornelius Schröder (@coschroeder)
      Jupyter Notebook
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      MIT License
      •0•4•0•0•Updated May 13, 2024May 13, 2024

    • neuro-behavior-conditioning

      Public
      Masked variational autoencoders for modeling conditional distributions of neural and behavioral data
      Python
      •
      MIT License
      •0•5•0•0•Updated Apr 29, 2024Apr 29, 2024

    • tsnpe_neurips_dev

      Public
      Development repo for Deistler et al. 2022
      Jupyter Notebook
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      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Feb 21, 2024Feb 21, 2024

    • tsnpe_neurips

      Public
      Code to reproduce results from `Truncated proposals for scalable and hassle-free simulation-based inference`
      Jupyter Notebook
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      GNU Affero General Public License v3.0
      •2•3•0•0•Updated Feb 21, 2024Feb 21, 2024

    • sbi_AIMS

      Public
      Public repository for the sbi course at AIMS 2024
      Jupyter Notebook
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      MIT License
      •1•3•0•0•Updated Jan 21, 2024Jan 21, 2024

    • toy_data

      Public
      Small toy dataset.
      0•0•0•0•Updated Dec 19, 2023Dec 19, 2023

    • mnle-for-ddms

      Public
      Research code for Mixed Neural Likelihood Estimation (MNLE, Boelts et al. 2022)
      Jupyter Notebook
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      GNU Affero General Public License v3.0
      •5•17•1•0•Updated Dec 4, 2023Dec 4, 2023

    • sbi-for-connectomics

      Public
      Research code and results for the paper "Simulation-based inference for computational connectomics" (Boelts et al. 2023 PLoS CB, @janfb)
      bayesian-inferenceconnectomicssimulation-based-inference
      Jupyter Notebook
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      MIT License
      •3•3•0•0•Updated Dec 4, 2023Dec 4, 2023

    • synapsegan

      Public
      SynapseGAN: Indistinguishable network dynamics can emerge from unalike plasticity rules
      Jupyter Notebook
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      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Nov 19, 2023Nov 19, 2023

    • pyrnn

      Public
      General code for training (biologically inspired) recurrent neural networks. Code by Matthijs Pals (@Matthijspals)
      Jupyter Notebook
      •0•3•0•0•Updated Oct 31, 2023Oct 31, 2023

    • RABI

      Public
      Code for robust amortized bayesian inference package
      Jupyter Notebook
      •1•4•0•0•Updated Oct 17, 2023Oct 17, 2023