Repositories list

• jmzTab-m-webapp

  Public
  The mzTab Validator webapplication

  JavaScript

  •

  Apache License 2.0

  •1•0•2•14•Updated Dec 27, 2024Dec 27, 2024

• goslin-webapp

  Public
  Web application and REST Api for parsers for the Grammars on succinct lipid nomenclature (Goslin).

  parsingnomenclaturegrammar+ 4metabolomicsmass-spectrometrylipidlipidomics

  Java

  •

  Apache License 2.0

  •0•1•2•10•Updated Dec 21, 2024Dec 21, 2024

• keycloak-docker-role-mapper

  Public
  Keycloak mapper implementation to support role-based authentication via Keycloak, mapping to docker registries push and pull scopes.

  keycloakdocker-registry-v2

  Java

  •

  Apache License 2.0

  •5•10•2•5•Updated Dec 20, 2024Dec 20, 2024

• jmzTab-m

  Public
  Reference implementation for mzTab-M 2.0 for metabolomics

  Java

  •

  Apache License 2.0

  •6•5•5•10•Updated Dec 18, 2024Dec 18, 2024

• lipidxplorer

  Public
  Python

  •

  Other

  •1•1•2•0•Updated Dec 17, 2024Dec 17, 2024

• cppgoslin

  Public
  C++ implementation of parsers for the Grammars on succinct lipid nomenclature (Goslin).

  parsingnomenclaturegrammar+ 4metabolomicsmass-spectrometrylipidlipidomics

  C++

  •

  Other

  •0•0•1•5•Updated Dec 17, 2024Dec 17, 2024

• jgoslin

  Public
  Java implementation of the latest shorthand nomenclature.

  parsingnomenclaturegrammar+ 4metabolomicsmass-spectrometrylipidlipidomics

  Java

  •

  Apache License 2.0

  •0•4•1•11•Updated Dec 16, 2024Dec 16, 2024

• lipidhome-web

  Public
  The web interface of LipidHome. Automatically exported from code.google.com/p/lipidhome.

  JavaScript

  •

  Apache License 2.0

  •3•0•0•5•Updated Dec 2, 2024Dec 2, 2024

• lipidomics-checklist

  Public
  Lipidomics Checklist

  Python

  •

  MIT License

  •0•0•2•0•Updated Nov 17, 2024Nov 17, 2024

• goslin

  Public
  Goslin is the Grammar on succinct lipid nomenclature.

  parsingnomenclaturegrammar+ 4metabolomicsmass-spectrometrylipidlipidomics

  ANTLR

  •

  Other

  •2•11•10•2•Updated Nov 14, 2024Nov 14, 2024

• lipidcompass-code

  Public
  TypeScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• ils-ceramide-ring-trial

  Public
  R

  •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024

• pygoslin

  Public
  Python implementation of parsers for the Grammars on succinct lipid nomenclature (Goslin).

  parsingnomenclaturegrammar+ 4metabolomicsmass-spectrometrylipidlipidomics

  Python

  •

  Other

  •2•3•2•2•Updated Aug 3, 2024Aug 3, 2024

• pymzTab-m

  Public
  The Python3 language bindings for mzTab-M

  Python

  •

  MIT License

  •4•8•2•3•Updated Jul 16, 2024Jul 16, 2024

• empirical-lipid-ms-score

  Public
  R

  •

  Other

  •0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

• rgoslin

  Public
  Rgoslin Repository for Bioconductor submission

  C++

  •

  MIT License

  •0•5•1•1•Updated Jun 14, 2024Jun 14, 2024

• csgoslin

  Public
  C# implementation of the Goslin framework

  C#

  •

  Other

  •0•0•1•5•Updated May 16, 2024May 16, 2024

• lipidspace

  Public
  LipidSpace

  C++

  •

  MIT License

  •0•2•0•1•Updated May 9, 2024May 9, 2024

• mztabm-editor

  Public
  Python

  •

  MIT License

  •0•0•0•5•Updated May 1, 2024May 1, 2024

• lipidcreator

  Public
  LipidCreator is a powerful stand alone kick-off tool for targeted lipidomics and a plugin for Skyline. It provides convenient tools to generate transition lists for labeled and unlabeled lipids.

  C#

  •

  Other

  •2•11•11•6•Updated Feb 18, 2024Feb 18, 2024

• streamlit-ontology-elements

  Public
  JavaScript

  •

  MIT License

  •0•1•0•0•Updated Dec 19, 2023Dec 19, 2023

• flipr-transition-extractor

  Public
  MSDK-based tool to extract MS2 transition data for CE series from mzML files

  Java

  •

  Apache License 2.0

  •0•0•1•12•Updated Dec 5, 2023Dec 5, 2023

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •

  MIT License

  •3.3k•0•0•0•Updated Nov 28, 2023Nov 28, 2023

• .github

  Public
  LIFS Tools Overview

  bioinformaticsmetabolomicsmass-spectrometry+ 1lipidomics

  0•0•0•0•Updated Oct 26, 2023Oct 26, 2023

• LipidDataTables

  Public
  MIT License

  •0•0•0•0•Updated Oct 10, 2023Oct 10, 2023

• rmzTab-m

  Public
  The R-language bindings for mzTab-M

  validationmass-spectrometrylipidomics+ 3data-formatmetabolomicsmztab

  R

  •

  MIT License

  •1•4•5•0•Updated Jan 25, 2023Jan 25, 2023

• goslin-sparql

  Public
  A SPARQL endpoint for lipid shorthand nomenclature

  Java

  •

  Apache License 2.0

  •0•0•1•10•Updated Jun 23, 2022Jun 23, 2022

• awesome-lipidomics

  Public
  A collection of awesome lipidomics tools and resources

  bioinformaticsdatabaserepository+ 3lipidomicsawesomeawesome-list

  Creative Commons Attribution 4.0 International

  •3•12•0•0•Updated Jun 23, 2022Jun 23, 2022

• rgoslin-old

  Public archive
  R implementation of parsers for the Grammars on succinct lipid nomenclature (Goslin).

  parsingnomenclaturegrammar+ 4metabolomicsmass-spectrometrylipidlipidomics

  C++

  •

  MIT License

  •0•1•2•10•Updated Jan 11, 2022Jan 11, 2022

• flipr

  Public
  Fragment-based Lipid Relative Intensity Prediction

  R

  •

  MIT License

  •0•0•0•1•Updated Jan 7, 2022Jan 7, 2022