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    25 repositories

    • various_R_scripts

      Public
      R
      •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • sci-rocket

      Public
      Snakemake workflow for (pre-)processing sci-RNA-seq3 data
      Python
      •
      MIT License
      •3•0•0•0•Updated Mar 19, 2024Mar 19, 2024

    • seurat-fix-parquet

      Public
      R toolkit for single cell genomics
      R
      •
      Other
      •907•0•0•0•Updated Jan 11, 2024Jan 11, 2024

    • SpaNN-OMRF-dev

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 30, 2023Nov 30, 2023

    • MutantHuntWGS

      Public
      Bioinformatics pipeline for identification and characterization of mutations in Saccharomyces cerevisiae
      Shell
      •4•0•0•0•Updated Jul 14, 2023Jul 14, 2023

    • DeepLabCut

      Public
      Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
      Python
      •
      GNU Lesser General Public License v3.0
      •1.7k•0•0•0•Updated May 23, 2023May 23, 2023

    • cli

      Public
      Python framework for command line applications
      Python
      •16•0•0•0•Updated Apr 21, 2023Apr 21, 2023

    • seurat

      Public
      R toolkit for single cell genomics
      R
      •
      Other
      •907•0•0•0•Updated Dec 9, 2022Dec 9, 2022

    • cellenics-pipeline

      Public
      The Cellenics pipeline project for dependency-managed work processing.
      R
      •
      Other
      •3•0•0•0•Updated Dec 8, 2022Dec 8, 2022

    • why_use_github

      Public
      Powerpoint and resources for Why Use GitHub for Research talk
      HTML
      •0•1•0•0•Updated Nov 4, 2022Nov 4, 2022

    • single-cell-repository

      Public
      R
      •
      MIT License
      •4•0•0•0•Updated Oct 5, 2022Oct 5, 2022

    • SeeSpotRun

      Public
      ⭐ Here we present the pipeline used for analyzing the motion of fluorescently-tagged chromosomal loci. This repository provides the materials required to generate an xyz position dataset suitable for downstream analysis using the multi-locus-analysis package: https://github.com/brunobeltran/multi_locus_analysis.
      Jupyter Notebook
      •2•0•0•0•Updated Sep 21, 2022Sep 21, 2022

    • genomicscalss_PH525x_labs

      Public
      Rmd source files for the HarvardX series PH525x
      R
      •
      MIT License
      •1.9k•0•0•0•Updated Jul 10, 2022Jul 10, 2022

    • PeacoQC

      Public
      Peak-based selection of high quality cytometry data
      R
      •7•0•0•0•Updated Jun 22, 2022Jun 22, 2022

    • ids2names

      Public
      R
      •
      Other
      •0•0•0•0•Updated Jun 17, 2022Jun 17, 2022

    • get_started_with_hpc

      Public
      Powerpoint and Resources for Getting Started with the HPC workshop
      HTML
      •0•0•0•0•Updated Jun 15, 2022Jun 15, 2022

    • get_hmdb_name

      Public
      Given a file containing a list of metabolites return given list with the HMDB IDs
      Shell
      •0•0•0•0•Updated May 25, 2022May 25, 2022

    • example-project

      Public
      How to make a repo on GitHub!
      0•0•0•0•Updated May 5, 2022May 5, 2022

    • crazy_R

      Public
      Cool R tricks that you probably shouldn't use unless you have a very good reason and really know what you are doing
      R
      •0•1•0•0•Updated Apr 15, 2022Apr 15, 2022

    • parallel-examples

      Public
      parallel bash examples
      bashscriptingparallel
      Shell
      •0•0•0•0•Updated Apr 13, 2022Apr 13, 2022

    • SPLINTR_preprocessing

      Public
      Scripts to pre-process SPLINTR barcoding libraries as performed in Fennell & Vassiliadis et al. Nature 2021
      HTML
      •
      MIT License
      •1•0•0•0•Updated Mar 10, 2022Mar 10, 2022

    • vdjtools

      Public
      Post-analysis of immune repertoire sequencing data
      Groovy
      •
      Other
      •40•0•0•0•Updated Mar 9, 2022Mar 9, 2022

    • BiocWorkshops

      Public
      ⚠️ 2018 ⚠️ Bioconductor Workshops
      TeX
      •53•0•0•0•Updated May 15, 2019May 15, 2019

    • vim-cheatsheet

      Public
      📟 My personal vim cheatsheet
      203•0•0•0•Updated Sep 5, 2018Sep 5, 2018

    • pycli

      Public
      A Tiny Python CLI Library Based On argparse
      Python
      •2•0•0•0•Updated Jul 30, 2018Jul 30, 2018