Repositories list

• aibridge

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

• microbe-metabolite-interaction

  Public
  Codebase- CB

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• maplet

  Public
  R statistical toolbox for metabolomics

  R

  •

  GNU General Public License v3.0

  •6•20•72•0•Updated Oct 9, 2024Oct 9, 2024

• autofocus

  Public
  Code repository for the AutoFocus project

  R

  •0•1•0•0•Updated Sep 6, 2024Sep 6, 2024

• RAGatouille

  Public
  Easily use and train state of the art late-interaction retrieval methods (ColBERT) in any RAG pipeline. Designed for modularity and ease-of-use, backed by research.

  Python

  •

  Apache License 2.0

  •224•0•0•0•Updated Aug 19, 2024Aug 19, 2024

• prostate-cancer-edrn

  Public
  R

  •

  MIT License

  •0•1•0•0•Updated Nov 27, 2023Nov 27, 2023

• keto-beam-ad

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 24, 2023Nov 24, 2023

• PRIME

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 16, 2023Nov 16, 2023

• sgi

  Public
  SGI: automatic clinical subgroup identification in omics datasets

  R

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Oct 21, 2023Oct 21, 2023

• ad-mayo-tauopathies

  Public
  R

  •0•0•0•0•Updated Jul 17, 2023Jul 17, 2023

• covid-ards-urine

  Public
  R

  •0•1•0•0•Updated Mar 30, 2023Mar 30, 2023

• covid-ards-plasma

  Public
  R

  •0•1•0•0•Updated Mar 30, 2023Mar 30, 2023

• pitracer

  Public
  HTML

  •0•1•0•0•Updated Feb 26, 2023Feb 26, 2023

• rox

  Public
  Rox package

  R

  •0•0•0•0•Updated Jan 13, 2023Jan 13, 2023

• ad-brain-landscape

  Public
  The landscape of metabolic brain alterations in Alzheimer’s disease (supplementary code)

  R

  •0•2•0•0•Updated Nov 5, 2022Nov 5, 2022

• ad-adni-Xplatforms

  Public
  R

  •0•0•0•0•Updated Sep 4, 2022Sep 4, 2022

• rpair

  Public
  regularized-pairwise-ranking-models

  Fortran

  •0•0•0•0•Updated Aug 23, 2022Aug 23, 2022

• maplet-shiny

  Public
  R

  •0•0•0•0•Updated Jul 16, 2022Jul 16, 2022

• mtVAE

  Public
  Variational autoencoders learn universal latent representations of metabolomics data (supplementary code)

  R

  •

  GNU General Public License v3.0

  •3•12•1•1•Updated Jun 12, 2022Jun 12, 2022

• covid-vascular-injury

  Public
  The maladaptive vascular response in COVID-19 acute respiratory distress syndrome and recovery (supplementary code)

  R

  •0•0•0•0•Updated Mar 10, 2022Mar 10, 2022

• covid-omics

  Public
  Integrative Metabolomic and Proteomic Signatures Define Clinical Outcomes in Severe COVID-19 (supplementary code)

  R

  •0•0•1•0•Updated Feb 6, 2022Feb 6, 2022

• glioma-cysteine

  Public
  Cysteine induces mitochondrial reductive stress in glioblastoma through hydrogen peroxide production (supplementary code)

  R

  •0•0•0•0•Updated Sep 1, 2021Sep 1, 2021

• BDS-Capstone

  Public
  R

  •3•0•0•0•Updated Jun 23, 2021Jun 23, 2021

• MoDentify

  Public
  Phenotype-driven module identification based on multi-level networks, R package

  R

  •2•6•5•0•Updated Mar 19, 2021Mar 19, 2021

• CutoffOpt

  Public
  Prior-knowledge-based cutoff optimization for correlation networks (supplementary code for doi:10.1038/s41467-020-18675-3)

  R

  •4•5•0•0•Updated Oct 15, 2020Oct 15, 2020

• GlycoNorm

  Public
  Network-based evaluation of data normalization strategies (supplementary code for doi:10.3390/metabo10070271)

  R

  •0•0•0•0•Updated Jul 2, 2020Jul 2, 2020

• Odefy

  Public
  Odefy MATLAB package

  MATLAB

  •0•2•2•0•Updated Oct 28, 2019Oct 28, 2019

• SurvRank

  Public
  SurvRank R package

  R

  •0•1•1•0•Updated Apr 12, 2019Apr 12, 2019

• MissingValues

  Public
  R code for simulation of incomplete metabolomics data and imputation methods (supplementary code for https://link.springer.com/article/10.1007%2Fs11306-018-1420-2)

  R

  •3•4•0•0•Updated Sep 28, 2018Sep 28, 2018