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cellmap-models
PublicRepository of model architectures and network weights used for CellMap segmentations.dacapo
PublicA framework for easy application of established machine learning techniques on large, multi-dimensional images.- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for training 2D and 3D models, workflows for prediction and post-processing on out-of-memory arrays, and evaluation of results against validation data.
cellmap-schemas
Publiccellmap-data
PublicUtility for loading CellMap data for machine learning training, utilizing PyTorch, TensorStore, Xarray, and PyDantic.annotator-metrics
Publicopenorganelle-blog
Publicn5_to_ome_zarr
Publicrusty_mws
Publicfibsem-tools
Publiccellmap-n5-to-zarr
Publicopenorganelle
Publicprocess-blockwise
Publicexpr_c-elegans
Publicneuroglancer
Publiccellmap-nuclei
Publicutils-share
Publicamira_python_extensions
Publicpydantic-zarr
Publicfunlib.persistence
Publicpycookie
Publiccombine-amira-tifs
Publicpydantic-neuroglancer
Publicfunlib.evaluate
Publicngff-zarr
Publicairtable-backups
Publicnuclear_pore_setup
Publiccosem-lm-em-registration
Publicfibsem-metadata
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