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    249 repositories

    • be487-fall-2024

      Public
      metagenomics 487/587
      Jupyter Notebook
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • chapel_metag_pipeline

      Public
      metagenomics workflow using chapel
      0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

    • be434-Spring2024

      Public
      Jupyter Notebook
      •
      MIT License
      •21•0•0•0•Updated Apr 30, 2024Apr 30, 2024

    • phage_detection_benchmarks

      Public
      Code used to benchmark metagenomic phage detection tools.
      Python
      •
      MIT License
      •1•2•0•1•Updated Mar 3, 2024Mar 3, 2024

    • Simulated_metagenomes_generator

      Public
      Pipeline to generate simulated metagenome of known composition using InSilicoSeq
      Shell
      •
      MIT License
      •0•0•0•0•Updated Jul 14, 2023Jul 14, 2023

    • mash

      Public
      R
      •
      GNU General Public License v3.0
      •0•1•0•2•Updated Jul 6, 2023Jul 6, 2023

    • planet-microbe-functional-annotation

      Public
      Python
      •
      MIT License
      •0•3•0•0•Updated Jul 6, 2023Jul 6, 2023

    • planet-microbe-app

      Public
      Planet Microbe - Semantic search across ‘omics, environmental, and physiochemical data layers.
      Elm
      •
      MIT License
      •3•1•0•19•Updated Jun 21, 2023Jun 21, 2023

    • planet-microbe-semantic-web-analysis

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 8, 2023Jun 8, 2023

    • elm-imicrobe-spa

      Public
      Elm
      •
      MIT License
      •4•10•0•19•Updated Jan 7, 2023Jan 7, 2023

    • b2_web

      Public
      B2 Web Interface (back/frontend)
      Elm
      •
      MIT License
      •0•0•0•6•Updated Dec 10, 2022Dec 10, 2022

    • WoundDB_app

      Public
      Shiny_App for the Wound DB
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 14, 2022Apr 14, 2022

    • planet-microbe-scripts

      Public
      Planet Microbe scripts and examples
      Python
      •2•0•0•0•Updated Dec 29, 2021Dec 29, 2021

    • planet-microbe-ontology

      Public
      Makefile
      •
      Other
      •1•0•2•0•Updated Dec 17, 2021Dec 17, 2021

    • planet-microbe-datapackages

      Public
      Data packages for the Planet Microbe project
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Dec 17, 2021Dec 17, 2021

    • appetizer

      Public
      Create the app.json for Stampede
      Elm
      •
      MIT License
      •1•4•0•0•Updated Nov 16, 2021Nov 16, 2021

    • planet-microbe-frictionless-data-package-paper

      Public
      Repository with all source code and data to generate the figures from the manuscript about the Planet Microbe Frictionless Data Packages.
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Nov 1, 2021Nov 1, 2021

    • hurwitzLab

      Public
      R package with color palettes for HurwitzLab
      R
      •
      Other
      •0•0•0•0•Updated Oct 26, 2021Oct 26, 2021

    • WGCNA-of-Type-II-Diabetic-Skin

      Public
      WGCNA of Type II Diabetic Skin
      R
      •0•2•0•0•Updated Oct 18, 2021Oct 18, 2021

    • ppr_meta

      Public
      PPR Meta
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Feb 17, 2021Feb 17, 2021

    • node-imicrobe

      Public
      Node app server for iMicrobe data
      JavaScript
      •
      MIT License
      •5•1•0•2•Updated Sep 4, 2020Sep 4, 2020

    • plan-b

      Public
      Job Service
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Jun 20, 2020Jun 20, 2020

    • hurwitzlab.github.io

      Public
      Website for the Hurwitz Lab
      CSS
      •0•0•0•0•Updated Jun 20, 2020Jun 20, 2020

    • imicrobe-landing-page

      Public
      Static HTML/CSS for iMicrobe landing page
      HTML
      •0•0•0•0•Updated Jun 13, 2020Jun 13, 2020

    • purloiner

      Public
      Annotate datasets with PURLs and such
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 11, 2020Jun 11, 2020

    • biosystems-analytics-2020

      Public
      434/534 Biosystems Analytics course at the University of Arizona
      Python
      •
      MIT License
      •25•1•0•0•Updated May 13, 2020May 13, 2020

    • imicrobe-16SrDNA-OTU-Clustering

      Public
      A CyVerse pipeline for clustering 16S rDNA data.
      Python
      •
      MIT License
      •1•0•1•0•Updated Feb 27, 2020Feb 27, 2020

    • viral_hunting_pipeline

      Public
      Pipeline for assembly of metagenomes and retrieval of viral contigs
      Shell
      •
      MIT License
      •0•0•0•0•Updated Feb 21, 2020Feb 21, 2020

    • eggnog_mapper

      Public
      EggNog Mapper
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Feb 5, 2020Feb 5, 2020

    • iqtree

      Public
      IQ-TREE
      Shell
      •
      MIT License
      •1•0•0•0•Updated Feb 5, 2020Feb 5, 2020