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    11 repositories

    • epistasis-supercomputers

      Public
      Ports of epistasis detection methods targeting large-scale systems with AMD and NVIDIA GPUs
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 6, 2025Jul 6, 2025

    • EPIClear

      Public
      Epistasis detection leveraging genetic data to accelerate exhaustive searches
      Cuda
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 7, 2025Jun 7, 2025

    • SpEpistasis

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • episdet-transformer

      Public
      Transformer Neural Network For High Order Epistasis Detection
      Python
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated May 1, 2024May 1, 2024

    • IPU-EpiDet

      Public
      Epistasis detection on systems with IPU processors
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 23, 2024Feb 23, 2024

    • cross-dpc-episdet

      Public
      C++
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Sep 21, 2023Sep 21, 2023

    • crossarch-episdet

      Public
      Epistasis detection using Data Parallel C++ on the Intel DevCloud computer cluster
      C
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Sep 21, 2023Sep 21, 2023

    • Epi4Tensor

      Public
      Fourth-order epistasis detection using NVIDIA tensor cores
      Cuda
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 28, 2022Aug 28, 2022

    • tensor-episdet

      Public
      Epistasis detection implemented in CUDA relying on fused XOR+POPC matrix operations using Turing tensor cores
      Cuda
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Oct 28, 2021Oct 28, 2021

    • cuda-episdet

      Public
      High-order epistasis detection for systems with CUDA GPUs
      C
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 28, 2021Oct 28, 2021

    • het-cl-episdet

      Public
      OpenCL implementation for heterogeneous CPU+GPU systems for second and third order epistasis detection
      C++
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 27, 2021Oct 27, 2021