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    4 repositories

    • GZM_InducibleTF

      Public
      Modeling inducible transcriptional regulators, GEM & ZPM, dose-response.
      MATLAB
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 17, 2020Oct 17, 2020

    • NatureFeedbackdegronLOCKR

      Public
      Code and data used for Ng et al. (2019; Nature)
      controlsynthetic-biologygene-regulatory-network
      Jupyter Notebook
      •3•0•0•0•Updated Oct 16, 2020Oct 16, 2020

    • bioPIDcontrol

      Public
      Code used for simulations & analysis in Chevalier, Gómez-Schiavon et al. (2019; Cell Systems)
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 16, 2020Oct 16, 2020

    • CoRa

      Public
      CoRa is a general framework that quantifies the contribution of a biological feedback control mechanism to adaptation using a mathematically controlled comparison to an identical system that does not contain the feedback. CoRa provides a simple and intuitive metric with broad applicability to biological feedback systems.
      Julia
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Oct 13, 2020Oct 13, 2020