Repositories list

• ONTmetacriptom-NF

  Public
  A nextflow workflow to analyse long reads from oxford nano-pore technology

  Shell

  •

  MIT License

  •1•0•0•0•Updated Mar 23, 2023Mar 23, 2023

• mini-projects-2022

  Public
  For the Residential Training Mini-projects

  2•0•7•0•Updated Aug 5, 2022Aug 5, 2022

• Workflows_and_package_management

  Public
  Reproducibility and package management : workflow languages (CWL, Snakemake, Conda).

  Python

  •60•2•0•1•Updated Aug 3, 2022Aug 3, 2022

• Python4BioinformaticsV2

  Public
  Updated materials for MSc Bioinformatics for Pwani University

  Jupyter Notebook

  •63•0•0•0•Updated Jan 11, 2022Jan 11, 2022

• MyFirstFork

  Public
  Fork this repository and make changes to the README

  106•0•0•0•Updated Nov 5, 2021Nov 5, 2021

• IntroductoryLinux-2019

  Public
  Shell

  •15•2•0•0•Updated Nov 2, 2021Nov 2, 2021

• mini-projects-2021

  Public
  7•0•3•0•Updated Aug 18, 2021Aug 18, 2021

• IntroductoryGit

  Public
  Creative Commons Attribution 4.0 International

  •21•1•0•0•Updated Aug 5, 2021Aug 5, 2021

• augustus_parallel

  Public
  Run AUGUSTUS gene prediction in parallel

  Shell

  •

  MIT License

  •4•0•0•0•Updated Jun 12, 2021Jun 12, 2021

• Group-5-miniproject_RNASEQ

  Public
  A collaborative project on RNA sequencing_Gene expression analysis

  HTML

  •10•0•0•0•Updated Aug 28, 2020Aug 28, 2020

• Mini-project-group-06

  Public
  HTML

  •8•0•0•0•Updated Aug 28, 2020Aug 28, 2020

• Group_1-Reproducible-CCBG-pipeline

  Public
  Python

  •8•0•0•0•Updated Aug 28, 2020Aug 28, 2020

• EANBiT-RT2020

  Public
  Website for the 2019 iteration of EANBiT Residential Training.

  CSS

  •6•0•0•0•Updated Jul 27, 2020Jul 27, 2020

• Genomics

  Public
  Geomics and metagenomics workshop

  HTML

  •0•0•0•0•Updated Jul 24, 2020Jul 24, 2020

• mini-projects-2020

  Public
  Mini-projects for the 2020 EANBiT virtual training.

  20•0•6•0•Updated Jul 10, 2020Jul 10, 2020

• EANBiT2020_RT_Participants

  Public
  28•0•1•5•Updated Jul 8, 2020Jul 8, 2020

• EANBiT-RT2019

  Public
  Website for the 2019 iteration of EANBiT Residential Training.

  CSS

  •8•1•1•0•Updated Jun 2, 2020Jun 2, 2020

• DataCuration

  Public
  Training Resources for H3A Fellows Training

  0•0•0•0•Updated Feb 26, 2020Feb 26, 2020

• Intro2MachineLearning

  Public
  Jupyter Notebook

  •12•0•0•0•Updated Jul 19, 2019Jul 19, 2019

• ReproducibleResearch

  Public
  Additional Training materials for workflows and package management

  Python

  •

  MIT License

  •4•0•0•0•Updated Jul 16, 2019Jul 16, 2019

• R_Rmarkdown_Shiny

  Public
  This repository is meant for the R part of the EANBiT 2019 residential training

  R

  •4•0•0•0•Updated Jul 12, 2019Jul 12, 2019

• Phylogenetics

  Public
  This is the repository for the module on phylogenetics (Thursday 11 July 2019)

  11•1•0•0•Updated Jul 11, 2019Jul 11, 2019

• Scientific_presentation_skills

  Public
  3•0•0•0•Updated Jul 6, 2019Jul 6, 2019

• mini-projects-19

  Public
  Mini-projects for the residential training

  6•0•5•0•Updated Jul 5, 2019Jul 5, 2019

• Biological_databases_API

  Public
  An introduction to Biological Databases and how the API can be used to access data

  Jupyter Notebook

  •12•2•0•0•Updated Jul 4, 2019Jul 4, 2019

• Reproduce_genomic_analysis

  Public
  Reproduce the genomic analysis carried out in a paper

  0•0•0•0•Updated Jun 28, 2019Jun 28, 2019

• Variant_calling_pipeline

  Public
  Convert a Variant Calling Pipeline to a workflow language of choice

  0•0•0•0•Updated Jun 28, 2019Jun 28, 2019