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@cov-lineages CoV-lineages

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    18 repositories

    • pango-designation

      Public
      Repository for suggesting new lineages that should be added to the current scheme
      Jupyter Notebook
      •
      Other
      •98•1k•75•0•Updated Nov 8, 2024Nov 8, 2024

    • hedgehog

      Public
      Spikey SARS-CoV-2 sequence based lineage set assignment
      Python
      •
      GNU General Public License v3.0
      •3•4•0•1•Updated Oct 21, 2024Oct 21, 2024

    • lineages-website

      Public
      HTML
      •13•16•3•1•Updated Oct 16, 2024Oct 16, 2024

    • pangolin

      Public
      Software package for assigning SARS-CoV-2 genome sequences to global lineages.
      Python
      •
      GNU General Public License v3.0
      •107•428•14•3•Updated Sep 23, 2024Sep 23, 2024

    • pangolin-assignment

      Public
      The latest lineage assignments from pangolin.
      Python
      •
      GNU General Public License v3.0
      •2•8•1•0•Updated Sep 23, 2024Sep 23, 2024

    • pangolin-data

      Public
      Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
      PureBasic
      •
      GNU General Public License v3.0
      •2•29•6•0•Updated Sep 23, 2024Sep 23, 2024

    • grinch

      Public
      global report investigating novel coronavirus haplotypes
      Python
      •
      GNU General Public License v3.0
      •2•6•3•2•Updated Sep 2, 2024Sep 2, 2024

    • constellations

      Public
      Python
      •
      Other
      •17•44•3•1•Updated Nov 27, 2023Nov 27, 2023

    • scorpio

      Public
      serious constellations of reoccurring phylogenetically-independent origin
      Python
      •
      GNU General Public License v3.0
      •4•38•6•0•Updated Oct 11, 2023Oct 11, 2023

    • Sample_names

      Public
      0•0•0•0•Updated Oct 15, 2022Oct 15, 2022

    • pangoLEARN

      Public
      Store of the trained model for pangolin to access.
      PureBasic
      •
      GNU General Public License v3.0
      •13•55•6•0•Updated Oct 4, 2022Oct 4, 2022

    • quokka

      Public
      QUality Of Known Klusters Assessed
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 11, 2022May 11, 2022

    • llama

      Public archive
      Local Lineage and Monophyly Assessment
      Python
      •
      GNU General Public License v3.0
      •3•16•4•0•Updated Aug 5, 2021Aug 5, 2021

    • lineages-website-old

      Public
      CSS
      •
      Other
      •1•7•4•0•Updated Jul 8, 2021Jul 8, 2021

    • lineages

      Public archive
      Resources for calling and describing the circulating lineages of SARS-CoV-2
      Python
      •
      Other
      •10•37•4•0•Updated Apr 6, 2021Apr 6, 2021

    • type_variants

      Public
      Python
      •
      MIT License
      •6•1•0•0•Updated Feb 18, 2021Feb 18, 2021

    • pangoLEARN-training

      Public
      pipeline for training pangoLEARN model
      Python
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Feb 14, 2021Feb 14, 2021

    • cov-support

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 3, 2021Feb 3, 2021