carpentries-incubator

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183 repositories

carpentries-incubator.org
Public
HTML
•7•6•3•3•Updated Jan 7, 2025Jan 7, 2025
bioc-rnaseq
Public
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
r bioconductor rna-seq-analysis hacktoberfest pre-alpha life-sciences bulk-rna-seq carpentries-incubator english lesson
R
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Other
•34•21•20•2•Updated Jan 7, 2025Jan 7, 2025
kubernetes-introduction
Public
Reproducible Computational Environments Using Containers: Introduction to Kubernetes
kubernetes english lesson pre-alpha carpentries-incubator
Other
•1•0•0•1•Updated Jan 7, 2025Jan 7, 2025
targets-workshop
Public
Pre-alpha {targets} workshop
r reproducible-research english lesson pre-alpha
R
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Other
•9•34•20•3•Updated Jan 7, 2025Jan 7, 2025
bioc-project
Public
Introduction to the Bioconductor project
r bioconductor hacktoberfest pre-alpha life-sciences carpentries-incubator english lesson
R
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Other
•15•18•6•2•Updated Jan 7, 2025Jan 7, 2025
julia-novice
Public
A lesson exploring the Julia language
programming julia julia-language alpha carpentries-incubator lesson
Julia
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Other
•23•17•13•0•Updated Jan 7, 2025Jan 7, 2025
SDC-BIDS-EEG-EEGLAB
Public
Working with EEGLAB and BIDS-EEG
programming matlab eeg english eeg-signals neuroimaging eeg-data bids pre-alpha eeg-analysis
Other
•2•2•1•0•Updated Jan 7, 2025Jan 7, 2025
python-intermediate-development
Public
"Intermediate Research Software Development Skills (Python)" Lesson Material
python training beta software-development lesson training-materials carpentry-lesson intermediate software-design software-engineering-research
TeX
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Other
•63•52•43•0•Updated Jan 7, 2025Jan 7, 2025
SDC-BIDS-dMRI
Public
Introduction to dMRI
programming neuroimaging dwi fsl pre-alpha diffusion-mri tractography ants dipy carpentries-incubator
Jupyter Notebook
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Other
•18•24•22•2•Updated Jan 7, 2025Jan 7, 2025
R-help-reprexes
Public
A lesson on getting unstuck in R, debugging, making reproducible examples (for biologists)
debugging r minimal reproducible example help english lesson pre-alpha reprex
R
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Other
•1•3•19•2•Updated Jan 7, 2025Jan 7, 2025
hpc-workflows
Public
HPC Workflow Management with Snakemake
snakemake english lesson workflows pre-alpha carpentries-incubator hpc-carpentry
Python
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Other
•4•3•9•0•Updated Jan 7, 2025Jan 7, 2025
r-tidyverse-4-datasets
Public
R and the Tidyverse for working with data
r tidyverse data-visualization english lesson alpha data-manipulation carpentries-incubator
R
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Other
•6•1•3•1•Updated Jan 7, 2025Jan 7, 2025
python-humanities-lesson
Public
Python for Humanities
programming english lesson alpha digital-humanities carpentries carpentries-incubator python
Other
•7•13•5•0•Updated Jan 7, 2025Jan 7, 2025
intro-data-viz
Public
a Carpentries-style lesson introducing the basics of data visualization
english lesson pre-alpha carpentries-incubator data-visualization
Other
•2•9•11•0•Updated Jan 7, 2025Jan 7, 2025
pando-python
Public
Performance Profiling & Optimisation of Research Code (Python) - Short Course
python programming english lesson alpha profiling open-educational-resources carpentries-incubator
Python
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Other
•4•0•0•0•Updated Jan 7, 2025Jan 7, 2025
SDC-BIDS-fMRI
Public
fMRI Imaging Analysis
python programming binder english neuroimaging fmri bids nilearn pre-alpha fmri-data-analysis
Jupyter Notebook
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Other
•39•42•5•2•Updated Jan 7, 2025Jan 7, 2025
snakemake-novice-bioinformatics
Public
Introduction to Snakemake for Bioinformatics
english workflows pre-alpha carpentries-incubator bioinformatics snakemake lesson
Python
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Other
•9•19•23•1•Updated Jan 7, 2025Jan 7, 2025
intro-to-modern-fortran
Public
Introduction to Modern Fortran
programming fortran english lesson pre-alpha carpentries-incubator
R
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Other
•5•15•11•6•Updated Jan 7, 2025Jan 7, 2025
ai-teacher-feedback-lesson
Public
Evaluating AI in Teacher Performance Reviews: Benefits, Biases, and Best Practices
sentiment-analysis english lesson pre-alpha gemini-api carpentries-incubator
Other
•0•0•0•0•Updated Jan 7, 2025Jan 7, 2025
SDC-BIDS-sMRI
Public
Structural Neuroimaging Analysis in Python
mri neuroimaging bids pre-alpha carpentries-incubator python english lesson
Jupyter Notebook
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Other
•18•27•3•2•Updated Jan 7, 2025Jan 7, 2025
fair-explainable-ml
Public
Fair and explainable ML workshop
python machine-learning ai ml pytorch artificial-intelligence trustworthy-machine-learning trustworthy-ai
Jupyter Notebook
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Other
•5•3•2•0•Updated Jan 7, 2025Jan 7, 2025
fair-research-software
Public
A course on tools and practices for open, sustainable and FAIR (Findable, Accessible, Interoperable and Reusable) research software
english lesson alpha fair research-software fair-software carpentries-incubator
Python
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Other
•7•10•16•1•Updated Jan 7, 2025Jan 7, 2025
SDC-BIDS-IntroMRI
Public
Introduction to MRI and BIDS
english neuroimaging alpha carpentries-incubator python binder mri lesson bids
Jupyter Notebook
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Other
•20•24•9•0•Updated Jan 7, 2025Jan 7, 2025
gitlab-novice
Public
Introduction to GitLab
english lesson pre-alpha carpentries-incubator git gitlab
Other
•0•0•11•0•Updated Jan 7, 2025Jan 7, 2025
medical-image-processing
Public
Medical Image Processing with Python
python image-processing english lesson radiology pre-alpha pathology carpentries-incubator
Other
•0•4•12•4•Updated Jan 7, 2025Jan 7, 2025
ML_with_AWS_SageMaker
Public
Learn how to run predictive AI/ML procedures (train, tune, etc.) using AWS SageMaker
aws ml english lesson pre-alpha sagemaker carpentries-incubator
Jupyter Notebook
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Other
•2•0•0•0•Updated Jan 7, 2025Jan 7, 2025
intro-image-classification-cnn
Public
new lesson on image classification with convolutional neural networks
python english neural-networks image-classification lesson pre-alpha carpentries-incubator
Python
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Other
•3•2•34•0•Updated Jan 7, 2025Jan 7, 2025
deep-learning-intro
Public
Learn Deep Learning with Python
python deep-neural-networks neural-network beta carpentries carpentries-incubator deep-learning english lesson
Jupyter Notebook
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Other
•36•32•30•3•Updated Jan 6, 2025Jan 6, 2025
bioc-scrnaseq
Public
Single-cell RNAseq materials derived from the 2023 ISMB OSCA workshop in the carpentries workbench format.
rna-seq r english bioconductor lesson single-cell pre-alpha carpentries-incubator
R
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Other
•2•3•11•0•Updated Jan 3, 2025Jan 3, 2025
high-dimensional-stats-r
Public
High-dimensional statistics with R
r statistics pre-alpha carpentries-incubator high-dimensional-statistics english lesson
Python
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Other
•18•12•0•1•Updated Dec 23, 2024Dec 23, 2024