Repositories list

• biscicol-server

  Public
  Service endpoint code for searching PPO elasticsearch data

  JavaScript

  •2•1•3•13•Updated Oct 29, 2024Oct 29, 2024

• geome-db

  Public
  Java

  •

  MIT License

  •0•2•21•0•Updated Oct 25, 2024Oct 25, 2024

• geome-ui

  Public
  JavaScript

  •

  MIT License

  •4•3•72•8•Updated Oct 25, 2024Oct 25, 2024

• biocode-lims

  Public
  The Biocode LIMS plugin integrates Geneious with your lab workflow, allowing you to track processes through tissue sample, extraction, PCR, sequencing and assembly. It is best suited for large scale DNA barcoding efforts.

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•9•52•0•Updated Oct 21, 2024Oct 21, 2024

• localcontexts_json

  Public
  Python

  •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

• ppo-data-interface

  Public
  Visual global plant phenology

  plantphenology

  JavaScript

  •6•0•5•0•Updated Jun 26, 2024Jun 26, 2024

• geome-configurations

  Public
  Manage project configurations for geome

  Vue

  •0•1•1•0•Updated Apr 27, 2024Apr 27, 2024

• localcontexts_db

  Public archive
  Local contexts back-end

  Python

  •

  Other

  •2•6•0•0•Updated Jan 25, 2024Jan 25, 2024

• biocode_website

  Public
  Code to build the Biocode website

  HTML

  •1•0•0•1•Updated Jan 22, 2024Jan 22, 2024

• geome-scripts

  Public
  A place for monitoring scripts for GEOME

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 6, 2023Dec 6, 2023

• ppo-data-pipeline

  Public
  Python

  •0•4•2•9•Updated Oct 16, 2023Oct 16, 2023

• ontology-data-pipeline

  Public
  A high-throughput ontology-based pipeline for data integration

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5•14•8•12•Updated May 17, 2023May 17, 2023

• geomedb

  Public
  A set of R scripts for accessing and working with FIMS data from R

  R

  •2•2•2•0•Updated Nov 12, 2022Nov 12, 2022

• trait-viz

  Public
  Visualize trait data

  JavaScript

  •0•0•0•0•Updated Aug 10, 2021Aug 10, 2021

• query_fetcher

  Public
  Fetch data from a named graph using a SPARQL query you pass in

  Java

  •0•1•0•0•Updated Aug 7, 2021Aug 7, 2021

• documentation

  Public
  Issues and Documentation on the FIMS family of services

  0•0•0•0•Updated Jul 29, 2021Jul 29, 2021

• elk_pipeline

  Public
  Python

  •0•0•0•0•Updated Jul 23, 2021Jul 23, 2021

• bcid

  Public
  Biocode Commons Identifiers

  Java

  •0•2•2•0•Updated Jun 8, 2021Jun 8, 2021

• ror-parser

  Public archive
  Python script to parse ROR JSON file

  Python

  •0•0•0•0•Updated May 26, 2021May 26, 2021

• localcontexts_ui

  Public
  User Interface for local contexts interface

  0•1•4•0•Updated May 12, 2021May 12, 2021

• biocode-fims-tissues

  Public
  Java

  •0•1•0•0•Updated Jun 19, 2020Jun 19, 2020

• biocode-fims-commons

  Public
  Biocode Field Information Management System

  Java

  •0•3•15•0•Updated Apr 27, 2020Apr 27, 2020

• biocode-fims-photos

  Public
  Java

  •0•0•2•0•Updated Jan 27, 2020Jan 27, 2020

• biocode-fims-evolution

  Public
  Plugin to integrate with Evolution API

  Java

  •0•0•0•0•Updated Nov 7, 2019Nov 7, 2019

• biscicol-fims

  Public
  Biocode-Fims app at www.biscicol.org

  JavaScript

  •0•1•9•0•Updated Feb 28, 2019Feb 28, 2019

• arms-fims

  Public
  Biocode FIMS backend for ARMS Interface

  JavaScript

  •0•0•7•0•Updated Dec 22, 2018Dec 22, 2018

• gradle-fims

  Public
  Groovy

  •0•0•0•0•Updated Oct 8, 2018Oct 8, 2018

• bioValidator

  Public
  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Sep 21, 2018Sep 21, 2018

• md-data-table

  Public
  Material Design Data Table for Angular Material

  JavaScript

  •

  MIT License

  •519•0•0•0•Updated Sep 21, 2018Sep 21, 2018

• biocode-fims

  Public
  Biocode Field Information Management System

  JavaScript

  •2•3•17•0•Updated Jul 3, 2018Jul 3, 2018