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    39 repositories

    • ProFOLD2

      Public
      ProFOLD2 - A protein 3D structure prediction application
      bioinformaticsprotein-foldingaritificial-intelligence
      Python
      •
      MIT License
      •1•5•0•3•Updated Aug 22, 2025Aug 22, 2025

    • proteina

      Public
      Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and relies on a tailored scalable transformer architecture.
      Python
      •
      Other
      •24•0•0•1•Updated Jul 30, 2025Jul 30, 2025

    • alphafold3

      Public
      AlphaFold 3 inference pipeline.
      Python
      •
      Other
      •915•0•0•0•Updated Jul 28, 2025Jul 28, 2025

    • tcr_pmhc

      Public
      Predicting neoantigen and T-cell receptor binding by integrating structural context and sequence evolutionary conservation
      bioinformaticsartificial-intelligenceprotein-foldingprotein-fitnessbinding-affinity-prediction
      Python
      •
      MIT License
      •1•1•0•0•Updated Jul 8, 2025Jul 8, 2025

    • falcon2

      Public
      JavaScript
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 12, 2025May 12, 2025

    • rMSA2

      Public
      RNA Multiple Sequence Alignment
      Perl
      •8•0•0•0•Updated May 10, 2025May 10, 2025

    • verl

      Public
      verl: Volcano Engine Reinforcement Learning for LLMs
      Python
      •
      Apache License 2.0
      •2.2k•0•0•0•Updated Apr 29, 2025Apr 29, 2025

    • open-r1

      Public
      Fully open reproduction of DeepSeek-R1
      Python
      •
      Apache License 2.0
      •2.4k•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • ProDESIGN-LE

      Public
      An accurate and efficient protein sequence design approach
      Python
      •5•24•0•0•Updated Mar 16, 2025Mar 16, 2025

    • BioML

      Public
      Apache License 2.0
      •0•0•1•0•Updated Mar 8, 2025Mar 8, 2025

    • BERT

      Public
      BERT on 《倚天屠龙记》
      Python
      •1•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • GPT

      Public
      GPT on 《倚天屠龙记》
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

    • llama-recipes

      Public
      Scripts for fine-tuning Meta Llama with composable FSDP & PEFT methods to cover single/multi-node GPUs. Supports default & custom datasets for applications such as summarization and Q&A. Supporting a number of candid inference solutions such as HF TGI, VLLM for local or cloud deployment. Demo apps to showcase Meta Llama for WhatsApp & Messenger.
      Jupyter Notebook
      •2.6k•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.5k•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • llama3

      Public
      The official Meta Llama 3 GitHub site
      Python
      •
      Other
      •3.5k•0•0•0•Updated Aug 12, 2024Aug 12, 2024

    • AF-MultiDomain

      Public
      MIT License
      •0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • foldseek-client

      Public
      Python
      •0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

    • alphafold_trainer

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated May 27, 2024May 27, 2024

    • bioinfo.ict.ac.cn

      Public
      www
      MIT License
      •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

    • website

      Public
      MIT License
      •0•1•0•0•Updated Apr 2, 2024Apr 2, 2024

    • msa-suite

      Public
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Mar 24, 2024Mar 24, 2024

    • alphamissense

      Public
      Python
      •
      Apache License 2.0
      •78•0•0•0•Updated Mar 13, 2024Mar 13, 2024

    • alphafold2

      Public
      To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
      Python
      •
      MIT License
      •267•1•0•0•Updated Aug 28, 2023Aug 28, 2023

    • glyBranch

      Public
      Java
      •1•2•0•1•Updated Aug 23, 2023Aug 23, 2023

    • HH-suite-database

      Public
      Shell
      •0•0•0•0•Updated Jun 11, 2023Jun 11, 2023

    • QA-RESE

      Public
      Python
      •0•0•0•0•Updated Jun 28, 2021Jun 28, 2021

    • ProFOLD

      Public
      A protein 3D structure prediction application
      Python
      •
      MIT License
      •16•1•0•0•Updated Mar 24, 2021Mar 24, 2021

    • hhsuite2

      Public
      A fork for the old hhsuite-2.0.16
      C
      •
      Other
      •5•0•0•0•Updated Nov 27, 2020Nov 27, 2020

    • ISSEC

      Public
      Inter-SSE contacts prediction
      Python
      •0•3•1•0•Updated Sep 11, 2020Sep 11, 2020

    • PDB_Tool

      Public
      Extract structural features from original PDB file
      C++
      •
      GNU General Public License v3.0
      •12•0•0•0•Updated Jul 14, 2020Jul 14, 2020