Improve protein structure prediction accuracy by MSA searching strategies
- How to run msa-suite
Install dependencies: hh-suite && qhhmer && cd-hit$ git clone [email protected]:bigict/msa-suite.git $ cd msa-suite $ git submodule update --init $ $ cd hh-suite $ cmake -DCMAKE_INSTALL_PREFIX=.. . $ make && make install $ cd .. $ $ cd qhmmer $ ./configure --prefix=`readlink -f ..` $ make && make install && make -C easel install $ cd .. $ $ cd cdhit $ make $ PREFIX=../bin make install $ cd .. $ python msa_build.py
- Download databases
$ sh scripts/download_jgi.sh db