Bioinformatics Group @ SMU

All

95 repositories

yulab-smu.github.io
Public
🏠 Homepage for YuLab-SMU
HTML
•4•12•0•0•Updated Nov 16, 2024Nov 16, 2024
Supplemental_ggtree_placement
Public
Supplementary code and data
R
•2•0•0•1•Updated Nov 15, 2024Nov 15, 2024
ggtangle
Public
Draw Network with Data
R
•0•7•0•0•Updated Nov 15, 2024Nov 15, 2024
clusterProfiler
Public
📊 A universal enrichment tool for interpreting omics data
visualization go rstats kegg enrichment-analysis gsea
R
•256•1k•325•2•Updated Nov 12, 2024Nov 12, 2024
SVP
Public
R
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GNU General Public License v3.0
•0•5•0•0•Updated Nov 12, 2024Nov 12, 2024
scsaur
Public
0•0•0•0•Updated Nov 7, 2024Nov 7, 2024
yulab.utils
Public
Miscellaneous functions commonly used by 'YuLab-SMU'.
R
•10•31•0•0•Updated Nov 7, 2024Nov 7, 2024
enrichplot
Public
Visualization of Functional Enrichment Result
pathway-analysis enrichment-analysis visualization
R
•65•232•109•0•Updated Nov 6, 2024Nov 6, 2024
ggtreeExtra
Public
🍋 Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
R
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GNU General Public License v3.0
•15•87•11•0•Updated Nov 4, 2024Nov 4, 2024
MicrobiotaProcess
Public
🦠 A comprehensive R package for deep mining microbiome
microbiome microbiome-analysis microbiome-data rstats
R
•37•182•84•0•Updated Nov 4, 2024Nov 4, 2024
seqcombo
Public
Visualization tool for genetic reassortment
R
•7•21•1•0•Updated Oct 30, 2024Oct 30, 2024
meshes
Public
🩺 MeSH Enrichment and Semantic analyses
semantic-similarity medical-subject-headings enrichment-analysis
R
•4•11•2•1•Updated Oct 30, 2024Oct 30, 2024
treeio
Public
🌱 Base Classes and Functions for Phylogenetic Tree Input and Output
parser exporter phylogenetic-trees
R
•26•96•24•1•Updated Oct 30, 2024Oct 30, 2024
ggtreeSpace
Public
🕸️Exploring phylomorphospace using 'ggtree'
R
•2•5•0•0•Updated Oct 30, 2024Oct 30, 2024
ggtreeDendro
Public
Drawing 'dendrogram' using 'ggtree'
clustering dendrogram
R
•3•12•0•0•Updated Oct 30, 2024Oct 30, 2024
ggsc
Public
🧠 Visualizing Single Cell and Spatial Transcriptomics
R
•12•43•0•0•Updated Oct 30, 2024Oct 30, 2024
MicrobiomeProfiler
Public
🦠 A shiny package for microbiome functional enrichment analysis
R
•7•36•0•1•Updated Oct 30, 2024Oct 30, 2024
ReactomePA
Public
Reactome Pathway Analysis
enrichment-analysis reactome-pathway-analysis reactomepa
R
•10•38•15•0•Updated Oct 30, 2024Oct 30, 2024
GOSemSim
Public
⛳ GO-terms Semantic Similarity Measures
bioinformatics gene-ontology semantic-similarity
R
•26•59•15•0•Updated Oct 30, 2024Oct 30, 2024
DOSE
Public
😷 Disease Ontology Semantic and Enrichment analysis
semantic-similarity disease-ontology enrichment-analysis
R
•36•117•23•2•Updated Oct 30, 2024Oct 30, 2024
ChIPseeker
Public
🎯 ChIP peak Annotation, Comparison and Visualization
annotation comparison epigenetics chip-seq atac-seq epigenomics visualization
R
•75•226•102•0•Updated Oct 30, 2024Oct 30, 2024
ggtree
Public
🎄Visualization and annotation of phylogenetic trees
visualization ggplot2 r annotations phylogenetic-trees
R
•171•840•165•1•Updated Oct 30, 2024Oct 30, 2024
ggfun
Public
useful functions for ggplot
R
•3•18•0•0•Updated Oct 24, 2024Oct 24, 2024
sclet
Public
A Lightweight Toolkit for Single-Cell Data Analysis
R
•6•4•1•1•Updated Oct 9, 2024Oct 9, 2024
obolite
Public
Create sqlite from an obo file
R
•1•0•0•0•Updated Sep 28, 2024Sep 28, 2024
wget
Public
download files in R using wget -c
R
•3•17•0•0•Updated Sep 24, 2024Sep 24, 2024
ggflow
Public
Draw flow chart based on ggtree
R
•0•8•0•0•Updated Sep 18, 2024Sep 18, 2024
aplot
Public
Decorate a plot with associated information
R
•15•99•9•0•Updated Sep 8, 2024Sep 8, 2024
scatterpie
Public
🎨 scatter pie plot
R
•15•60•21•0•Updated Aug 28, 2024Aug 28, 2024
mirrorselect
Public
To help select CRAN and Bioconductor mirrors.
R
•2•8•0•0•Updated Aug 26, 2024Aug 26, 2024