Repositories list

• vdi-service

  Public
  vdi

  Kotlin

  •

  Apache License 2.0

  •0•0•33•3•Updated Mar 7, 2025Mar 7, 2025

• service-eda

  Public
  Repo containing EDA web service

  Java

  •

  Apache License 2.0

  •0•0•25•2•Updated Mar 7, 2025Mar 7, 2025

• lib-jaxrs-container-core

  Public
  Core library for VEuPathDB JaxRS container services

  librarycontainersjaxrs

  Java

  •

  Apache License 2.0

  •0•0•12•1•Updated Mar 7, 2025Mar 7, 2025

• vdi-component-common

  Public
  Common components for VDI projects

  vdi

  Kotlin

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

• web-monorepo

  Public
  A monorepo that contains all frontend code for VEuPathDB websites

  TypeScript

  •

  Apache License 2.0

  •0•3•198•23•Updated Mar 6, 2025Mar 6, 2025

• bulk-rnaseq-nextflow

  Public
  Bulk RNASeq Workflow

  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• ApiCommonWorkflow

  Public
  Perl

  •

  Apache License 2.0

  •1•0•0•2•Updated Mar 6, 2025Mar 6, 2025

• ApiCommonData

  Public
  Perl

  •

  Apache License 2.0

  •3•3•0•2•Updated Mar 6, 2025Mar 6, 2025

• lib-jackson-singleton

  Public
  Preconfigured Jackson & Utils

  jsonlibraryjackson

  Kotlin

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• vdi-component-json

  Public
  Shared JSON handling library for VDI projects.

  kotlinjsonjvm+ 2jacksonvdi

  Kotlin

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• EbrcModelCommon

  Public
  Java

  •

  Apache License 2.0

  •2•1•4•1•Updated Mar 6, 2025Mar 6, 2025

• orthoFinder-nextflow

  Public
  orthoFinder Nextflow workflow

  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• vdi-plugin-isasimple

  Public
  Perl

  •

  Apache License 2.0

  •0•0•2•0•Updated Mar 6, 2025Mar 6, 2025

• EbrcWebsiteCommon

  Public
  Perl

  •

  Apache License 2.0

  •3•3•9•4•Updated Mar 6, 2025Mar 6, 2025

• ApiCommonWebsite

  Public
  Perl

  •

  Apache License 2.0

  •1•3•1•5•Updated Mar 6, 2025Mar 6, 2025

• websiteconf

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• ApiCommonModel

  Public
  Perl

  •

  Apache License 2.0

  •0•1•1•9•Updated Mar 6, 2025Mar 6, 2025

• ApidbSchema

  Public
  SQL and scripts to install the ApiDB schema

  PLSQL

  •

  Apache License 2.0

  •0•0•0•4•Updated Mar 6, 2025Mar 6, 2025

• vdi-plugin-wrangler

  Public
  General purpose VDI plugin to process files for EDA loading using the study-wrangler

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• StaticContent

  Public
  HTML

  •

  Apache License 2.0

  •6•0•0•4•Updated Mar 6, 2025Mar 6, 2025

• vdi-plugin-rnaseq

  Public
  Perl

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• vdi-plugin-genelist

  Public
  Python

  •

  Apache License 2.0

  •0•0•2•0•Updated Mar 5, 2025Mar 5, 2025

• MicrobiomeWebsite

  Public
  R

  •

  Apache License 2.0

  •0•2•2•2•Updated Mar 5, 2025Mar 5, 2025

• ClinEpiWebsite

  Public
  CSS

  •

  Apache License 2.0

  •0•2•3•1•Updated Mar 5, 2025Mar 5, 2025

• OrthoMCLWebsite

  Public
  Apache License 2.0

  •0•0•0•1•Updated Mar 5, 2025Mar 5, 2025

• vdi-plugin-example

  Public template
  VDI handler plugin example repository.

  vdi

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

• example-jaxrs-container-service

  Public template
  Demo of a containerized Raml & JaxRS based service project.

  platformtemplateservice+ 1example

  Java

  •

  Apache License 2.0

  •0•0•6•0•Updated Mar 5, 2025Mar 5, 2025

• trna-scan-nextflow

  Public
  Nextflow workflow for tRNAScanTask

  Nextflow

  •

  Apache License 2.0

  •1•0•0•0•Updated Mar 5, 2025Mar 5, 2025

• repeat-masker-nextflow

  Public
  nextflow workflow to modernize current repeatMasker workflow steps

  Perl

  •

  Apache License 2.0

  •1•1•0•0•Updated Mar 4, 2025Mar 4, 2025

• ApiCommonWebService

  Public
  Java

  •

  Apache License 2.0

  •1•0•0•1•Updated Mar 4, 2025Mar 4, 2025