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@UMN-EGGL University of Minnesota Equine Genetics and Genomics Lab

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    17 repositories

    • EGGLHackyHour

      Public
      A place to keep track of and talk about hackey hour
      Shell
      •4•3•0•0•Updated Mar 9, 2021Mar 9, 2021

    • MuscleFatTissueNetwork

      Public
      Muscle Fat Tissue Network Comparison
      Python
      •1•0•0•0•Updated Oct 12, 2020Oct 12, 2020

    • EGGLImputationPipeline

      Public
      Python
      •1•0•7•0•Updated Jun 26, 2020Jun 26, 2020

    • EMS_GWA

      Public
      Python
      •1•0•0•0•Updated Jun 10, 2020Jun 10, 2020

    • SingularityTutorial

      Public
      0•0•0•0•Updated May 1, 2020May 1, 2020

    • MNEc2to3

      Public
      Files and analyses related to upgrading MNEC from EquCab2 to 3
      Python
      •
      Other
      •0•1•1•0•Updated Jan 16, 2020Jan 16, 2020

    • RNAMapping

      Public
      Python
      •2•1•5•0•Updated Apr 19, 2019Apr 19, 2019

    • MSI-Setup

      Public
      Tools to make dealing with the intricacies of MSI better
      Shell
      •1•0•0•0•Updated Feb 13, 2019Feb 13, 2019

    • EquCab3Nice

      Public
      Some scripts to pull the canonical FASTA file from NCBI and make it nice
      Python
      •
      MIT License
      •3•1•0•1•Updated Aug 22, 2018Aug 22, 2018

    • DeNovoRNA

      Public
      A De Novo RNA-Seq pipeline
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 11, 2018Jun 11, 2018

    • HorseGeneAnnotation

      Public
      A crowd sourced gene annotation website for the horse
      CSS
      •
      Other
      •4•9•14•0•Updated Jun 5, 2018Jun 5, 2018

    • cob

      Public
      The gene CO-expression Browser
      JavaScript
      •
      MIT License
      •9•0•2•0•Updated Dec 18, 2017Dec 18, 2017

    • RecombinationMap

      Public
      Shell
      •1•0•0•0•Updated Apr 18, 2017Apr 18, 2017

    • BotBot

      Public
      A bot that does the management for you.
      Python
      •
      MIT License
      •2•0•0•0•Updated Mar 3, 2017Mar 3, 2017

    • PonyTools

      Public
      Tools for the MNEc Affymetrix SNP Chip
      Python
      •
      MIT License
      •2•0•0•0•Updated Mar 3, 2017Mar 3, 2017

    • FASTA-concatenator

      Public
      Concatenates exons in tabular genetic data, and then spits fierce FASTA and tabular output.
      Python
      •2•0•0•0•Updated Apr 25, 2016Apr 25, 2016

    • paleomix

      Public
      Python
      •
      MIT License
      •19•0•0•0•Updated Dec 17, 2015Dec 17, 2015