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    15 repositories

    • FHIR-Converter

      Public
      Thin wrapper around Microsoft FHIR Converter to allow for a standalone FHIR server that provides data conversion operations.
      C#
      •
      MIT License
      •1•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • DeidentiFHIR

      Public
      Scala
      •
      MIT License
      •2•8•9•1•Updated Jan 16, 2025Jan 16, 2025

    • saros-dataset

      Public
      Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data
      Python
      •
      MIT License
      •7•36•0•1•Updated Jan 16, 2025Jan 16, 2025

    • FHIR-PYrate

      Public
      FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter resources using RegEx and SpaCy and download DICOM studies and series.
      pythondata-sciencehealthcarefhirshipfhirpathumepyrateukessen
      Python
      •
      MIT License
      •11•58•11•4•Updated Jan 16, 2025Jan 16, 2025

    • DicomDeidentify

      Public
      dcm4che based DICOM de-identification lib
      Scala
      •3•2•0•0•Updated Jan 16, 2025Jan 16, 2025

    • DeidentiFHIR-Pipeline

      Public
      With the DeidentiFHIR-Pipeline, you can transfer FHIR based data from one source (e.g. a FHIR server) to a target (e.g. a FHIR server) and pseudonymize the data in between. Pseudonymization is based on the DeidentiFHIR library.
      Java
      •
      MIT License
      •0•1•1•0•Updated Jan 14, 2025Jan 14, 2025

    • DOME

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Jan 13, 2025Jan 13, 2025

    • DICOM-RST

      Public
      DICOMweb-compatible gateway server with DIMSE and S3 implementations
      rustdicomhealthcaremedical-imagingomi
      Rust
      •
      MIT License
      •2•19•13•2•Updated Dec 20, 2024Dec 20, 2024

    • dicom-deidentifier-ts

      Public
      TypeScript
      •
      MIT License
      •0•10•0•1•Updated Oct 24, 2024Oct 24, 2024

    • Body-and-Organ-Analysis

      Public
      BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical images and identifying the different structures within the human body, including bones, muscles, organs, and blood vessels.
      Python
      •
      Apache License 2.0
      •7•26•3•2•Updated Oct 4, 2024Oct 4, 2024

    • SALT

      Public
      Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.
      3d-segmentationmedical-image-segmentationconditional-probabilitieshierarchical-labels
      Python
      •
      MIT License
      •6•77•1•1•Updated Oct 4, 2024Oct 4, 2024

    • MM-WS-Scala

      Public
      A library that implements websocket functionality in Scala 2
      Scala
      •0•0•0•1•Updated Mar 28, 2024Mar 28, 2024

    • BOA-Contrast

      Public
      Python
      •
      MIT License
      •0•4•2•3•Updated Mar 13, 2024Mar 13, 2024

    • platelet-risk-assessment

      Public
      Python
      •
      MIT License
      •0•1•0•5•Updated Oct 25, 2023Oct 25, 2023

    • matrix-scala

      Public
      Scala
      •
      MIT License
      •0•3•0•2•Updated Jul 25, 2023Jul 25, 2023