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    • granny

      Public
      Python
      GNU General Public License v3.0
      13150Updated Oct 1, 2024Oct 1, 2024
    • GEMmaker

      Public
      A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
      Nextflow
      MIT License
      1634110Updated Jul 13, 2024Jul 13, 2024
    • KINC

      Public
      Knowledge Independent Network Construction
      C++
      MIT License
      411250Updated May 23, 2024May 23, 2024
    • FUNC-E

      Public
      FUNC-E performs functional enrichment of gene lists. It follows a similar approach to that of DAVID
      Python
      GNU General Public License v3.0
      3540Updated Sep 26, 2023Sep 26, 2023
    • EnTAPnf

      Public
      Functional Annotation of Gene Lists
      Nextflow
      MIT License
      4360Updated Nov 28, 2022Nov 28, 2022
    • configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      MIT License
      271000Updated May 4, 2022May 4, 2022
    • pynome-nf

      Public
      Nextflow implementation of Pynome for retrieval and parallel indexing of public whole genomes.
      Nextflow
      GNU General Public License v3.0
      0000Updated Apr 28, 2022Apr 28, 2022
    • pynome

      Public
      Genome collection script for the SciDAS project.
      Python
      GNU General Public License v3.0
      0010Updated Apr 28, 2022Apr 28, 2022
    • KINC-nf

      Public
      Nextflow pipeline for KINC
      Nextflow
      1120Updated Feb 14, 2022Feb 14, 2022
    • A tool for running bioinformatics workflows on a Kubernetes cluster
      Shell
      41020Updated Feb 2, 2022Feb 2, 2022
    • A repository for how to be awesome in the Feltus lab
      0030Updated Dec 3, 2021Dec 3, 2021
    • Nextflow
      Other
      1130Updated Dec 2, 2021Dec 2, 2021
    • KINC.R

      Public
      Supplemental R package for KINC
      R
      3240Updated Nov 8, 2021Nov 8, 2021
    • GEMprep

      Public
      Python
      GNU General Public License v3.0
      2321Updated Sep 29, 2021Sep 29, 2021
    • Feature extraction algorithm for genomic data
      Python
      MIT License
      01350Updated Sep 28, 2021Sep 28, 2021
    • GSForge

      Public archive
      A gene (feature) selection toolset for gene expression matrix (GEM) data.
      Python
      BSD 3-Clause "New" or "Revised" License
      2350Updated Sep 1, 2021Sep 1, 2021
    • A placeholder repository for the dev version of the docs website.
      HTML
      0000Updated Aug 18, 2021Aug 18, 2021
    • ACE

      Public
      Accelerated Computational Engine (ACE) is a GPU-enabled framework to simplify creation of GPU-capable applications
      C++
      GNU General Public License v2.0
      1141Updated Apr 28, 2020Apr 28, 2020
    • A gene expression matrix exploration tool set.
      Jupyter Notebook
      0100Updated Apr 2, 2019Apr 2, 2019
    • Docker / Singularity image for using the iRODS client commands on HPC systems
      Shell
      0010Updated Feb 20, 2019Feb 20, 2019
    • BioDepVis

      Public
      C++
      0090Updated Feb 5, 2019Feb 5, 2019
    • Instructions for running KINC v1.0 using a Singularity Image
      GNU General Public License v3.0
      0010Updated Mar 1, 2018Mar 1, 2018