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DMS-Analysis-Manager
PublicPHRP
PublicConverts a MS-GF+ .tsv search result file or an X!Tandem results file (XML format) into a series of tab-delimited text files, summarizing the results. It also supports results files from MaxQuant, MSAlign, TopPIC, MODa, MODPlus, and MSPathFinder, along with SEQUEST Synopsis/First Hits files.PRISM-Class-Library
PublicDBSchema_PgSQL_DMS
PublicDBSchema_DMS
PublicDMS-Website
PublicParameter-File-Editor
PublicMS-File-Info-Scanner
PublicExamines a series of MS data files (or data directories) and extracts the acquisition start and end times, number of spectra, and the total size of the data. In addition, it can create 2D-plot graphics of the m/z values vs. time for QA purposes.DMS-Capture-Task-Manager
PublicMASIC
PublicMASIC generates selected ion chromatograms (SICs) for all of the parent ions chosen for fragmentation in an LC-MS/MS analysis, characterizing the peak(s) in each SIC, computing peak statistics including elution time of the peak apex, peak area, and peak signal/noise. It can also extract reporter ion abundances (e.g. iTRAQ or TMT).PNNL.DIA.utils
PublicDMS-Space-Manager
PublicDeconTools
PublicUsed to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.MyEMSL-Reader
PublicAScore
PublicThe AScore program can process first-hits or synopsis files from MS-GF+, SEQUEST, or X!Tandem to compute confidence scores for the position of phosphorylated residues.Interference-Detection
PublicAlgorithm for quantifying the homogeneity of species isolated for fragmentation in LC-MS/MS analyses using data directed acquisition (DDA).Mage
PublicCyclops
PublicBuzzard
PublicDMS-Update-Manager
PublicData-Import-Manager
PublicThermo-Raw-File-Reader
Public.NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher ScientificUIMF-Library
PublicDLL-Version-Inspector
PublicDB-Schema-Export-Tool
PublicExports SQL Server and Postgres database objects as schema files. Exported objects include tables, views, stored procedures, and functions, plus also database properties including database roles and logins. The program can also export table data to create SQL files with an Insert Into statement for each row.