Repositories list

• PowerPixelsPipeline

  Public
  Python

  •0•11•1•0•Updated Nov 14, 2024Nov 14, 2024

• pipeline_MultiSensoryVR

  Public
  Preprocessing pipeline for Neuropixel recordings

  Python

  •0•0•0•0•Updated Feb 15, 2024Feb 15, 2024

• pipeline_2p

  Public
  Preprocessing pipeline for 2p imaging data, VR behaviour data and synchronization between the two.

  Jupyter Notebook

  •1•0•1•1•Updated Oct 20, 2023Oct 20, 2023

• pipeline_vsdi

  Public
  Preprocessing tools for voltage sensitive dye signal data

  Jupyter Notebook

  •

  MIT License

  •1•0•2•1•Updated Aug 31, 2023Aug 31, 2023

• DeepLabCut

  Public
  Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals

  Python

  •

  GNU Lesser General Public License v3.0

  •1.7k•0•0•0•Updated Mar 2, 2022Mar 2, 2022

• LinearTrack_Code

  Public
  Repository of analysis code for linear probe + single cell recordings in CA1

  MATLAB

  •1•0•0•0•Updated Jan 18, 2022Jan 18, 2022

• BasinsProbe_Code

  Public
  MATLAB

  •1•0•0•0•Updated Dec 23, 2021Dec 23, 2021

• PythonPlugin

  Public
  A plugin for open-ephys enabling the insertion of Cython into the open-ephys signal chain.

  Cython

  •17•11•13•0•Updated Dec 22, 2021Dec 22, 2021

• HybridDrive_method_paper

  Public
  analysis code for the Hybrid Drive methods paper

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 21, 2021Oct 21, 2021

• assembly_sequences

  Public
  Jupyter Notebook

  •5•0•0•0•Updated May 28, 2020May 28, 2020

• github-classroom-for-students

  Public
  71•1•0•0•Updated Apr 19, 2020Apr 19, 2020

• neuroseries

  Public
  Python

  •

  GNU General Public License v3.0

  •3•13•1•1•Updated Nov 7, 2019Nov 7, 2019

• TStoolbox

  Public
  A Matlab Toolbox to analyze neuronal data

  MATLAB

  •9•0•0•0•Updated Jul 8, 2019Jul 8, 2019

• matlab_examples

  Public
  Examples of Matlab code usage, for instructional purposes mostly

  MATLAB

  •0•0•0•0•Updated Jul 4, 2019Jul 4, 2019

• Hex-Snap

  Public
  An automated analysis pipeline for the Hex-Maze

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Jul 3, 2019Jul 3, 2019

• analysis-tools

  Public
  Code for reading data saved by the Open Ephys GUI

  C

  •176•0•0•0•Updated Jun 10, 2019Jun 10, 2019

• score

  Public
  Python

  •

  GNU General Public License v3.0

  •1•0•8•0•Updated Nov 18, 2018Nov 18, 2018

• spot

  Public
  Spike Pattern Optimal Transport

  Jupyter Notebook

  •3•0•0•0•Updated Jul 24, 2018Jul 24, 2018

• ratrack

  Public
  rat position tracking

  Python

  •3•0•0•0•Updated Jan 9, 2018Jan 9, 2018

• klusta

  Public
  Automatic spike sorting up to 64 channels

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •40•0•0•0•Updated Jul 20, 2017Jul 20, 2017

• phy

  Public
  Modules for manual spike sorting GUIs, ephys data analysis, visualization

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •157•0•0•0•Updated Jun 30, 2017Jun 30, 2017

• pyfly2

  Public
  Python wrapper for Point Grey Research's FlyCapture2 C API

  Python

  •10•0•0•0•Updated Feb 5, 2017Feb 5, 2017

• ZMQInterface

  Public
  C++

  •7•1•2•0•Updated Aug 12, 2016Aug 12, 2016