LinearTrack_Code

Repository of analysis code for linear probe + single cell recordings in CA1

LINEAR TRACK WORKFLOW:

3 Directories are assumed: \

• Raw data\
• GLM Location \
• Processed Results (Dropbox, GitHub or whatever)
  
  \

0. COMPUTE GAMMA COUPLINGS In code_gammas

• Basins and layer-resolved theta-gamma coupling AND layer-resolved gamma power
• Gamma coupling to animal speed and locations on the track

1. COMPUTE GLM
   In code_glm: \

• Compute_PhasePosition_GLM_1D
  
  2 COMPUTE CELL PROPERTIES
  In code_properties:\
• Move_Files\
• Compute_ThetaScores\
• Compute_PlaceFields\
• Compute_CellProperties \
• Define_ThetaLimits
  
  3 SPIKE TIMING MEASURES
  In code_spikes: \
• BurstAnalysis %Computes phase-spiking properties \
• CrossAnalysis % Computes pairwise-spike coordination \
• SingleTrial_PP % Computes measure for single trial phase precession \
• SpikeGamma_Analysis % Probability of spikes conditioned on dominating gamma \
• GammaPhase_Analysis % Probability of gamma dominating conditioned on theta phase
  
  4 PROCESS RESULTS AND PLOTS
  in code_plotting (should depend only on data available in Processed Results folder)
  \
• At the moment follows Guardamagna 2022 structure
  
  
  
  
  }