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    • Pipeline scripts and tools for reconstructing Electron Microscopy volumes.
      Python
      BSD 3-Clause "New" or "Revised" License
      3304Updated Mar 16, 2025Mar 16, 2025
    • Running compute-intense parts of BigStitcher distributed
      Java
      BSD 2-Clause "Simplified" License
      1324150Updated Mar 15, 2025Mar 15, 2025
    • Browse, share, and publish data in the Janelia file system
      CSS
      BSD 3-Clause "New" or "Revised" License
      0000Updated Mar 14, 2025Mar 14, 2025
    • Utilities for indexing and transferring of NeuronBridge-related files
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Mar 14, 2025Mar 14, 2025
    • jacs-cm

      Public
      JACS Configuration Management
      XSLT
      Other
      38173Updated Mar 14, 2025Mar 14, 2025
    • Utilities for Data and Information Services
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      11141Updated Mar 14, 2025Mar 14, 2025
    • Linux scripts for transferring data from rig computers
      Shell
      BSD 3-Clause "New" or "Revised" License
      0110Updated Mar 13, 2025Mar 13, 2025
    • JADE file storage services
      Java
      BSD 3-Clause "New" or "Revised" License
      0001Updated Mar 13, 2025Mar 13, 2025
    • Documentation website for HortaCloud
      HTML
      BSD 3-Clause "New" or "Revised" License
      0204Updated Mar 12, 2025Mar 12, 2025
    • transfero

      Public
      Python scripts for transferring data from rig computers
      Python
      0020Updated Mar 12, 2025Mar 12, 2025
    • EM/LM neuron search
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      14011Updated Mar 12, 2025Mar 12, 2025
    • Collection of tools for the G4 LED arena displays.
      MATLAB
      Creative Commons Attribution 4.0 International
      42120Updated Mar 11, 2025Mar 11, 2025
    • Central metadata server for Fileglancer deployments
      Python
      BSD 3-Clause "New" or "Revised" License
      0001Updated Mar 11, 2025Mar 11, 2025
    • Website showcasing Janelia Open Science Software Intiative (OSSI) supported software projects and other software developed at Janelia.
      Astro
      BSD 3-Clause "New" or "Revised" License
      181162Updated Mar 10, 2025Mar 10, 2025
    • Library for creating point clouds for sparse volumes within DVID
      Python
      BSD 3-Clause "New" or "Revised" License
      1100Updated Mar 10, 2025Mar 10, 2025
    • HortaCloud - 3D annotation platform for large microscopy data
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      110470Updated Mar 10, 2025Mar 10, 2025
    • Janelia Workstation
      Java
      Other
      1123013Updated Mar 10, 2025Mar 10, 2025
    • Pydantic models for OME-NGFF
      Python
      BSD 3-Clause "New" or "Revised" License
      32361Updated Mar 10, 2025Mar 10, 2025
    • x2s3

      Public
      S3 Proxy Service
      Python
      BSD 3-Clause "New" or "Revised" License
      0701Updated Mar 10, 2025Mar 10, 2025
    • easifish

      Public
      Nextflow
      BSD 3-Clause "New" or "Revised" License
      0000Updated Mar 8, 2025Mar 8, 2025
    • Nextflow modules for use with nf-core tooling
      Nextflow
      BSD 3-Clause "New" or "Revised" License
      0000Updated Mar 8, 2025Mar 8, 2025
    • Distributed Color Depth MIP Search
      Java
      BSD 3-Clause "New" or "Revised" License
      1102Updated Mar 7, 2025Mar 7, 2025
    • Library of common DOI-related functions for Python
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Mar 7, 2025Mar 7, 2025
    • JavaScript
      BSD 3-Clause "New" or "Revised" License
      0000Updated Mar 6, 2025Mar 6, 2025
    • Containers for workflow plugins
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Mar 5, 2025Mar 5, 2025
    • JAnelia Compute Services (JACS)
      Java
      BSD 3-Clause "New" or "Revised" License
      0100Updated Mar 4, 2025Mar 4, 2025
    • JACS Domain Model and DAOs
      Java
      BSD 3-Clause "New" or "Revised" License
      0100Updated Mar 4, 2025Mar 4, 2025
    • Java
      BSD 3-Clause "New" or "Revised" License
      0000Updated Mar 3, 2025Mar 3, 2025
    • Zarr.jl

      Public
      Janelia fork of Zarr.jl
      Julia
      Other
      27000Updated Mar 2, 2025Mar 2, 2025
    • Packages for the Unity game engine, emphasizing animal studies in VR.
      C#
      Other
      111652Updated Mar 1, 2025Mar 1, 2025