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    20 repositories

    • seqr

      Public
      web-based analysis tool for rare disease genomics
      Python
      •
      GNU Affero General Public License v3.0
      •89•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • ckan

      Public
      CKAN is an open-source DMS (data management system) for powering data hubs and data portals. CKAN makes it easy to publish, share and use data. It powers catalog.data.gov, open.canada.ca/data, data.humdata.org among many other sites.
      Python
      •
      Other
      •2k•0•3•1•Updated Feb 25, 2025Feb 25, 2025

    • HiTMaP_workflow

      Public
      A workflow wrapper around the HiTMaP R package from UOA
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • gatk-sv

      Public
      A structural variation pipeline for short-read sequencing
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •75•0•0•0•Updated Dec 10, 2024Dec 10, 2024

    • hail_vds_to_vcf

      Public
      A Hail batch script for exporting a VCF from a Hail VDS object.
      MIT License
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • gene-panel-explorer

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • mocha-wgs

      Public
      A WDL workflow for running MoChA on WGS data
      WDL
      •2•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • hpci

      Public
      Haskell
      •
      GNU General Public License v3.0
      •0•5•11•0•Updated Nov 5, 2024Nov 5, 2024

    • warp

      Public
      WDL Analysis Research Pipelines
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •102•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • hpci-reusable-actions

      Public
      0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • gml-expansion-hunter

      Public
      A WDL pipeline for running ExpansionHunter
      MIT License
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • gnomad-browser

      Public
      Explore gnomAD datasets on the web
      TypeScript
      •
      MIT License
      •47•0•1•1•Updated Sep 6, 2024Sep 6, 2024

    • anamorf-rust

      Public
      MIT License
      •0•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • gnomad_methods

      Public
      Hail helper functions for the gnomAD project and Translational Genomics Group
      Python
      •
      MIT License
      •29•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • hpc-rocket

      Public
      Python
      •
      MIT License
      •3•0•0•0•Updated Aug 29, 2024Aug 29, 2024

    • gnomad_qc

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •27•0•0•1•Updated Aug 21, 2024Aug 21, 2024

    • hail

      Public
      Cloud-native genomic dataframes and batch computing
      Python
      •
      MIT License
      •248•0•0•0•Updated May 30, 2024May 30, 2024

    • motion-correction

      Public
      Python
      •
      MIT License
      •0•1•1•0•Updated Mar 11, 2024Mar 11, 2024

    • galatea

      Public
      FLIM Image Processing
      JavaScript
      •0•0•0•0•Updated Feb 1, 2024Feb 1, 2024

    • tgg-terraform-modules

      Public
      Fork of Broad Institute repo
      HCL
      •3•0•2•0•Updated Jan 8, 2024Jan 8, 2024