Skip to content

@EpiDiverse EpiDiverse

Change the repository type filter

All

    Repositories list

    8 repositories

    • ewas

      Public
      The EpiDiverse Epigenome-Wide Association Study Pipeline, implemented with Nextflow
      Nextflow
      •
      MIT License
      •0•6•2•0•Updated Feb 28, 2023Feb 28, 2023

    • scripts

      Public
      Scripts for several purposes such as filtering, subsetting, extracting contexts, etc
      R
      •0•1•0•0•Updated Oct 13, 2022Oct 13, 2022

    • snp

      Public
      The EpiDiverse Bisulfite SNP-Calling and Methylation Clustering Pipeline, implemented with Nextflow
      Python
      •
      MIT License
      •4•10•1•0•Updated Jul 23, 2022Jul 23, 2022

    • wgbs

      Public
      The EpiDiverse Whole Genome Bisulfite Sequencing Pipeline, implemented with Nextflow
      Nextflow
      •
      MIT License
      •1•7•7•0•Updated Jul 19, 2022Jul 19, 2022

    • MethylScore

      Public
      Identification of differentially methylated regions between multiple epigenomes from BS-treated read mappings via methylated region calling
      Perl
      •
      Other
      •3•0•0•0•Updated Oct 22, 2021Oct 22, 2021

    • dmr

      Public
      The EpiDiverse Differentially Methylated Regions Pipeline, implemented with Nextflow
      Nextflow
      •
      MIT License
      •0•3•2•0•Updated Sep 23, 2021Sep 23, 2021

    • datasets

      Public
      Test datasets for EpiDiverse pipelines
      MIT License
      •0•0•0•0•Updated Jul 20, 2021Jul 20, 2021

    • epiGBS2

      Public
      FIND THE OFFICIAL RELEASE HERE: https://github.com/nioo-knaw/epiGBS2
      Python
      •
      MIT License
      •6•1•0•0•Updated Mar 19, 2020Mar 19, 2020