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    30 repositories

    • PHIAF

      Public
      Python
      •1•6•1•0•Updated Apr 17, 2023Apr 17, 2023

    • SGNNMD

      Public
      Python
      •3•0•0•0•Updated Mar 27, 2022Mar 27, 2022

    • TDRC

      Public
      tensor decomposition, python
      Python
      •0•8•0•0•Updated Dec 2, 2021Dec 2, 2021

    • AMMGC

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Oct 21, 2021Oct 21, 2021

    • GraphCDR

      Public
      GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction
      Python
      •9•25•0•0•Updated Sep 27, 2021Sep 27, 2021

    • MVGCN

      Public
      MVGCN: a novel multi-view graph convolutional network (MVGCN) framework for link prediction in biomedical bipartite networks.
      Python
      •8•0•0•0•Updated Sep 10, 2021Sep 10, 2021

    • CSGNN

      Public
      Python
      •4•11•0•0•Updated May 12, 2021May 12, 2021

    • test123

      Public
      0•0•0•0•Updated May 11, 2021May 11, 2021

    • BDSILP

      Public
      0•2•0•0•Updated Apr 11, 2021Apr 11, 2021

    • Disease-Mesh-Similarity

      Public
      For each disease, a directed acyclic graph (DAG) is constructed based on hierarchical descriptors, in which nodes represent disease MeSH descriptors (or disease terms) and edges represent the relationship between the current node and its ancestors. Then compare the DAG Similarity.
      Python
      •9•10•0•0•Updated Apr 6, 2021Apr 6, 2021

    • NEMII

      Public
      Python
      •2•5•3•0•Updated Apr 3, 2021Apr 3, 2021

    • EPIHC

      Public
      EPIHC: Improving Enhancer-Promoter Interaction Prediction by using Hybrid features and Communicative learning
      0•1•0•0•Updated Dec 15, 2020Dec 15, 2020

    • PredLnc-GFStack

      Public
      PredLnc-GFStack: a Global Sequence Feature Based on a Stacked Ensemble Learning Method for Predicting lncRNAs from Transcripts
      Python
      •3•3•0•0•Updated Aug 31, 2020Aug 31, 2020

    • GEEL

      Public
      Python
      •0•0•0•0•Updated Jul 24, 2020Jul 24, 2020

    • SLNPM

      Public
      LncRNA-miRNA interaction prediction through sequence-derived linear neighborhood propagation method with information combination
      MATLAB
      •3•4•0•0•Updated Jul 18, 2020Jul 18, 2020

    • GNNPapers

      Public
      Must-read papers on graph neural networks (GNN)
      3k•4•0•0•Updated Jun 25, 2020Jun 25, 2020

    • LAGCN

      Public
      Code and Datasets for "Predicting Drug-Disease Associations through Layer Attention Graph Convolutional Networks"
      Python
      •15•2•0•0•Updated May 26, 2020May 26, 2020

    • ItLnc-BXE

      Public
      ItLnc-BXE: Identification of plant lncRNAs using a Bagging-XGBoost-ensemble method with multiple features
      Python
      •0•2•0•0•Updated Feb 16, 2020Feb 16, 2020

    • DeepiRNA

      Public
      data and source codes for paper "DeepiRNA: Predicting transposon-derived piRNAs with deep learning"
      Python
      •1•1•0•0•Updated Nov 3, 2019Nov 3, 2019

    • relationGCN

      Public
      最基础的gcn实现单关联预测
      Python
      •2•3•0•0•Updated Oct 16, 2019Oct 16, 2019

    • network

      Public
      Python
      •3•1•0•0•Updated Oct 15, 2019Oct 15, 2019

    • sRNA-prediction

      Public
      Code and dataset for "Sequence-based bacterial small RNAs prediction using ensemble learning strategies" Please kindly cite the paper if you use the code or the datasets.
      Python
      •1•2•1•0•Updated Jul 13, 2019Jul 13, 2019

    • awesome-network-embedding

      Public
      A curated list of network embedding techniques.
      504•0•0•0•Updated Jun 14, 2019Jun 14, 2019

    • CD-LNLP

      Public
      Datasets and Code for "Predicting CircRNA-disease Associations through Linear Neighborhood Label Propagation Method"
      Python
      •4•2•1•0•Updated May 31, 2019May 31, 2019

    • SCMFDD

      Public
      MATLAB
      •
      MIT License
      •4•4•0•0•Updated May 28, 2019May 28, 2019

    • SFLLN

      Public
      The source code for our paper "SFLLN: a sparse feature learning ensemble method with linear neighborhood regularization for predicting drug-drug interactions". In this repository, you can find our dataset "feature matrix.xls", "interaction matrix.txt" and source code "SFLLN.py". Please follow the "Readme.txt" for more details.
      Python
      •2•4•0•0•Updated Nov 17, 2018Nov 17, 2018

    • lncRNA-protein-interaction-prediction

      Public
      The source codes for our paper submitted to Neurocomputing in 2017. We propose a linear label propagation method (LPLNP method) to predict unknown lncRNA-protein interactions. In this repository, you can find our dataset and code of individual LPLNP, intergrated LPLNP models, and other state-of-the-art methods. Please follow the Guideline.pdf.
      MATLAB
      •8•17•0•0•Updated Jun 5, 2017Jun 5, 2017

    • branchapp

      Public
      the desktop packege for the paper "Zhang, W., Zhu, X., Fu, Y., Tsuji, J., & Weng, Z. (2016). The prediction of human splicing branchpoints by multi-label learning. IEEE International Conference on Bioinformatics and Biomedicine (pp.254-259). IEEE Computer Society.'
      CSS
      •1•0•0•0•Updated Jun 2, 2017Jun 2, 2017

    • piRNAPredictor

      Public
      The source code for the paper "A genetic algorithm-based weighted ensemble method for predicting transposon-derived piRNAs",Zhang et al. (2016) 17: 329. doi:10.1186/s12859-016-1206-3
      Python
      •1•1•0•0•Updated Apr 15, 2017Apr 15, 2017

    • drug-drug-interaction

      Public
      The source code for the paper "Predicting potential drug-drug interactions by integrating chemical, biological, phenotypic and network data",Zhang et al. BMC Bioinformatics (2017) 18:18.
      Python
      •1•2•0•0•Updated Apr 15, 2017Apr 15, 2017