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    73 repositories

    • INTOXICOM_Workshop_2

      Public
      TeX
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • INTOXICOM_Workshop_1

      Public
      TeX
      •
      Creative Commons Attribution 4.0 International
      •6•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • PRA3006-SPARQL

      Public
      This ebook has information about life science databases, their SPARQL endpoints, what information they hold, what data models they use, and how to query those.
      sparqlwikidatawikipathwayslife-scienceschemblaop-wiki
      Groovy
      •
      Other
      •0•1•2•0•Updated Nov 4, 2024Nov 4, 2024

    • BridgeDbR

      Public
      BIoconductor R package for BridgeDb
      R
      •9•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • sparql-examples

      Public
      A set of SPARQL examples that are used in different TGX resources
      HTML
      •
      Other
      •9•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • MSB1015-Parallel-Programming

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • PSVD-transcriptomics-workflow

      Public
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jun 24, 2024Jun 24, 2024

    • ChEMBL-SPARQL-Queries

      Public
      SPARQL queries for the examples panel in https://chemblmirror.rdf.bigcat-bioinformatics.org
      MIT License
      •0•0•0•0•Updated Feb 26, 2024Feb 26, 2024

    • IEMPathwayAnalysis

      Public
      R
      •
      MIT License
      •0•0•1•0•Updated Dec 21, 2023Dec 21, 2023

    • KinRDF

      Public
      Conversion of kinetic data to an RDF model, compatible with WikiPathways PathWayModels
      Python
      •
      MIT License
      •0•0•9•0•Updated Dec 21, 2023Dec 21, 2023

    • BridgeDbConfig

      Public
      Java
      •
      Apache License 2.0
      •0•1•2•0•Updated Dec 6, 2023Dec 6, 2023

    • pils

      Public
      Programming In the Life Sciences
      javascriptapiwikidatad3js
      HTML
      •
      Creative Commons Attribution Share Alike 4.0 International
      •6•11•4•0•Updated Nov 17, 2023Nov 17, 2023

    • BiGCaT-Teaching

      Public
      Department of Bioinformatics - BiGCaT Teaching Materials
      bioinformaticsoer
      Apache License 2.0
      •1•1•2•0•Updated Nov 12, 2023Nov 12, 2023

    • website-monitoring

      Public archive
      Script and configuration for website monitoring
      Shell
      •1•1•0•0•Updated Nov 5, 2023Nov 5, 2023

    • org.pathvisio.io.bioschemas

      Public
      biohackeu23
      Java
      •0•1•0•0•Updated Nov 5, 2023Nov 5, 2023

    • BLAST-OER

      Public
      Open Educational Resource for first year biomedical sciences students into the world of BLAST.
      bioinformaticsoerblast
      0•0•1•0•Updated Oct 16, 2023Oct 16, 2023

    • kubernetes

      Public
      Webpage about the August 2023 Kubernetes workshop
      0•0•0•0•Updated Aug 23, 2023Aug 23, 2023

    • Metagenomics_Metabolomics_Analysis

      Public
      HTML
      •0•0•0•0•Updated Jul 17, 2023Jul 17, 2023

    • IMD_Curation_Analysis

      Public
      Inherited Metabolic Disorders (IMDs) queries to curate and analyse pathway models
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jun 5, 2023Jun 5, 2023

    • Transcriptomics_Metabolomics_Analysis_Rshiny

      Public
      R Shiny application for the multi-omics analysis of inflammatory bowel disease
      multi-omicsshiny-rinflammatory-bowel-disease
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated May 5, 2023May 5, 2023

    • AOP-DB-RDF

      Public
      Repository containing setup protocol and jupyter notebook for testing
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Apr 7, 2023Apr 7, 2023

    • IMD-PUPY

      Public
      Inherited Metabolic Disorders Systems Biology workflow on Purine, Pyrimidine and Urea Cycle disorders
      HTML
      •
      MIT License
      •0•0•0•0•Updated Apr 3, 2023Apr 3, 2023

    • imd-pathway-curation

      Public
      WikiPathways Curation for just the IMD pathways
      Java
      •1•0•2•0•Updated Mar 24, 2023Mar 24, 2023

    • Transcriptomics_Metabolomics_Analysis

      Public
      Automated workflow for Omics integration on IBDs data
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •2•2•0•0•Updated Mar 22, 2023Mar 22, 2023

    • PSnpBind-ML-notebook

      Public
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •3•5•0•0•Updated Feb 6, 2023Feb 6, 2023

    • qsar-rdf-sbd4nano

      Public
      Files needed for conversion of nano-QSAR models to RDF
      Jupyter Notebook
      •3•0•0•0•Updated Dec 22, 2022Dec 22, 2022

    • Lipid_Models

      Public
      Scripts to compare lipids and their related proteins in model species
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 1, 2022Dec 1, 2022

    • project26-molmedb

      Public
      Write up of interactions at the ELIXIR BioHackathon Europe 2022 in Project 26.
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Nov 30, 2022Nov 30, 2022

    • SPARQLTutorialBioSB2019

      Public
      SPARQL workshop organized by BiGCaT Maastricht University
      Other
      •2•1•0•0•Updated Sep 29, 2022Sep 29, 2022

    • WikiPathwaysCurator

      Public
      Unit tests that validate the WikiPathways content and support the curation of the knowledge base.
      Java
      •
      MIT License
      •2•0•0•0•Updated Aug 10, 2022Aug 10, 2022