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13 repositories

mobi-fs5-python
Public template
Molecular Biotechnology, Bioinformatik 5. FS, Vertiefungspraktikum Python Standard, Gruppe Rohr
heidelberg-university python-exercises mobi-fs5-python
Jupyter Notebook
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MIT License
•1•1•0•0•Updated Nov 11, 2024Nov 11, 2024
galaxy-image-analysis
Public
Galaxy tools for image analysis
usegalaxy usegalaxy-eu
Python
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MIT License
•17•15•3•0•Updated Oct 17, 2024Oct 17, 2024
mobi-fs3-python
Public template
Molecular Biotechnology, Methoden der Bioinformatik 3. FS, Bildanalyse, Programmierübungen
heidelberg-university python-exercises mobi-fs3-python
Jupyter Notebook
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MIT License
•0•1•0•0•Updated Oct 16, 2024Oct 16, 2024
github-workflows
Public
GitHub workflows used across many repositories
MIT License
•0•0•0•0•Updated Oct 11, 2024Oct 11, 2024
segmetrics
Public
Image segmentation and object detection performance measures
image-segmentation instance-segmentation object-segmentation segmentation-evaluation segmentation-analysis segmentation-accuracy
Python
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MIT License
•0•2•0•1•Updated Oct 4, 2024Oct 4, 2024
giatools
Public
Tools required for Galaxy Image Analysis
Python
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MIT License
•0•0•0•0•Updated Oct 2, 2024Oct 2, 2024
SuperDSM
Public
SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.
object-detection image-segmentation cell-segmentation instance-segmentation cell-detection object-segmentation cell-counting
Python
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Other
•0•3•1•1•Updated Sep 19, 2024Sep 19, 2024
SyntheticData
Public
0•0•0•0•Updated Aug 9, 2023Aug 9, 2023
staged-recipes-random-name
Public
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python
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BSD 3-Clause "New" or "Revised" License
•5k•0•0•0•Updated Mar 7, 2023Mar 7, 2023
ColocQuant-ColocJ
Public
Python
•0•1•0•0•Updated Aug 3, 2022Aug 3, 2022
ActiPHV
Public
R
•0•0•0•0•Updated Oct 28, 2019Oct 28, 2019
quantAFM
Public
quantAFM toolbox to automatically quantify filamentous complexes from AFM images
TeX
•0•0•0•0•Updated Jun 2, 2019Jun 2, 2019
docker-paraviewweb
Public
🐳 ParaViewWeb running in a docker container. This image can be used to integrate ParaViewWeb into Galaxy
Dockerfile
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MIT License
•7•11•0•0•Updated Sep 14, 2018Sep 14, 2018