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    • ConvertIm3

      Public
      The executable was written by Richard Wilton to extract the bitmap and metadata information from the akoya im3 image files.ConvertIm3Path is a powershell code, added by Benjamin Green and is a soft wrapper for the executable to run on the sample level and is dependent on the images being in the AstropathPipeline directory format. ConvertIm3Cohor…
      PowerShell
      •
      MIT License
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • ROCPicker

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • Thresholding

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • mIFTO

      Public
      Multiplex Immunoflouresence Titration Optimization (mIFTO) R Package
      multispectral-imagesmultiplex-immunofluorescence
      R
      •
      MIT License
      •3•6•3•0•Updated Sep 17, 2024Sep 17, 2024

    • .github

      Public
      0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • SciScript-Python

      Public
      Python libraries for SciScript, Jupyter Notebooks
      Python
      •
      Other
      •20•0•0•0•Updated May 23, 2024May 23, 2024

    • SegTool

      Public
      Create a segmentation tool for comparing inform and ML approaches while creating an unbiased ground truth
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Mar 18, 2024Mar 18, 2024

    • MaSS

      Public
      MaSS (Merge a Single Sample); code to merge multipass inForm data
      MATLAB
      •0•2•0•0•Updated Mar 12, 2024Mar 12, 2024

    • deepzoom.py

      Public
      Python Deep Zoom Tools
      Python
      •
      Other
      •80•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • checkout

      Public
      Action for checking out a repo
      TypeScript
      •
      MIT License
      •1.8k•0•0•0•Updated Jul 6, 2023Jul 6, 2023

    • SciServerR

      Public
      R libraries for SciScript, Jupyter Notebooks
      R
      •
      Other
      •4•0•0•0•Updated Jun 12, 2023Jun 12, 2023

    • WSIMIR

      Public
      Perform multi-modality whole slide to whole slide pathology image registration
      MATLAB
      •
      MIT License
      •1•4•0•0•Updated Jun 8, 2023Jun 8, 2023

    • AstroPathPipeline

      Public
      The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.
      cancer-imaging-researchmultispectral-imagesimmunofluorescencecancer-immunotherapycancer-immunologymultiplex-imaging
      Python
      •
      Apache License 2.0
      •3•18•0•0•Updated May 31, 2023May 31, 2023