Torch support part 1 #89
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: ["master"] | |
| pull_request: | |
| branches: ["master"] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y pandoc | |
| - name: Build Conda environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: test-environment | |
| environment-file: test-environment.yml | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: false | |
| - name: Install python dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install flake8 nose-py3 pytest pytest-cov coveralls | |
| pip install -r requirements.txt | |
| pip install -r docs/requirements.txt | |
| pip install . | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Download data and models | |
| run: | | |
| mhcflurry-downloads fetch data_curated data_mass_spec_annotated models_class1 models_class1_presentation models_class1_processing models_class1_pan allele_sequences | |
| - name: Test with pytest | |
| run: | | |
| pytest --cov=mhcflurry/ --cov-report=term-missing ./test | |
| # - name: Publish coverage to Coveralls | |
| # uses: coverallsapp/[email protected] | |
| # with: | |
| # parallel: true |