Merge pull request #222 from bgilbert/hooks #180
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| name: Python | |
| on: | |
| push: | |
| branches: [main] | |
| tags: ["*"] | |
| pull_request: | |
| branches: [main] | |
| permissions: | |
| contents: read | |
| env: | |
| PYTHONUNBUFFERED: 1 | |
| jobs: | |
| pre-commit: | |
| name: Rerun pre-commit checks | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - uses: pre-commit/[email protected] | |
| tests: | |
| name: Tests | |
| needs: pre-commit | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: [3.8, 3.9, "3.10", "3.11"] | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python tools | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install jinja2 pytest | |
| - name: Install OpenSlide | |
| run: | | |
| case "${{ matrix.os }}" in | |
| ubuntu-latest) | |
| sudo apt-get install libopenslide0 | |
| ;; | |
| macos-latest) | |
| brew install openslide | |
| ;; | |
| esac | |
| - name: Install | |
| run: pip install . | |
| - name: Run tests | |
| run: pytest -v | |
| - name: Tile slide | |
| run: python examples/deepzoom/deepzoom_tile.py --viewer -o tiled tests/fixtures/small.svs | |
| windows: | |
| name: Windows | |
| needs: pre-commit | |
| runs-on: windows-latest | |
| env: | |
| WINBUILD_RELEASE: 20230414 | |
| defaults: | |
| run: | |
| shell: bash | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.9, "3.10", "3.11"] | |
| python-arch: [x86, x64] | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} ${{ matrix.python-arch }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: ${{ matrix.python-arch }} | |
| - name: Install Python tools | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flask pytest wheel | |
| # Current Pillow releases don't have 32-bit wheels | |
| # https://github.com/python-pillow/Pillow/issues/7251 | |
| pip install Pillow --only-binary=:all: | |
| - name: Install OpenSlide | |
| run: | | |
| case "${{ matrix.python-arch }}" in | |
| x86) zipname=openslide-win32-${WINBUILD_RELEASE} ;; | |
| x64) zipname=openslide-win64-${WINBUILD_RELEASE} ;; | |
| esac | |
| mkdir -p c:\\openslide | |
| cd c:\\openslide | |
| curl -LO "https://github.com/openslide/openslide-winbuild/releases/download/v${WINBUILD_RELEASE}/${zipname}.zip" | |
| 7z x ${zipname}.zip | |
| echo "OPENSLIDE_PATH=c:\\openslide\\${zipname}\\bin" >> $GITHUB_ENV | |
| - name: Build wheel | |
| run: | | |
| python setup.py bdist_wheel | |
| basename=openslide-python-wheels-$GITHUB_RUN_NUMBER-$(echo $GITHUB_SHA | cut -c-10) | |
| mkdir -p "artifacts/${basename}" | |
| mv dist/*.whl "artifacts/${basename}" | |
| echo "basename=${basename}" >> $GITHUB_ENV | |
| - name: Install | |
| run: pip install -e . | |
| - name: Run tests | |
| # Reads OPENSLIDE_PATH | |
| run: pytest -v | |
| - name: Test library loading in examples | |
| # Reads OPENSLIDE_PATH | |
| run: | | |
| python examples/deepzoom/deepzoom_multiserver.py -h >/dev/null | |
| python examples/deepzoom/deepzoom_server.py -h >/dev/null | |
| python examples/deepzoom/deepzoom_tile.py -h >/dev/null | |
| - name: Tile slide | |
| # Reads OPENSLIDE_PATH | |
| run: python examples/deepzoom/deepzoom_tile.py --viewer -o tiled tests/fixtures/small.svs | |
| - name: Archive wheel | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.basename }} | |
| path: artifacts | |
| docs: | |
| name: Docs | |
| needs: pre-commit | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Install Python tools | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install sphinx | |
| - name: Build | |
| run: | | |
| basename=openslide-python-docs-$GITHUB_RUN_NUMBER-$(echo $GITHUB_SHA | cut -c-10) | |
| sphinx-build -d doctrees doc artifact/${basename} | |
| echo "basename=${basename}" >> $GITHUB_ENV | |
| - name: Archive | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.basename }} | |
| path: artifact |