quarto_render.yml

on:
  push:
    branches: [main]

name: Render project

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:
  build-deploy:
    runs-on: ubuntu-latest

    env:
      BRANCH_NAME: ${{ github.head_ref || github.ref_name }}
    
    steps:
      - name: install linux dependencies
        run: |
          sudo apt-get install libfontconfig1-dev libharfbuzz-dev libfribidi-dev

      - uses: actions/checkout@v4
        with:
          submodules: recursive

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: "4.3"
          use-public-rspm: true

      - name: Install system dependencies for igraph
        run: sudo apt-get update && sudo apt-get install -y libglpk40

      - name: Set up environment
        run: |
          echo "LINUX_VERSION=$(uname -rs)" >> $GITHUB_ENV

      - name: Cache Python packages
        uses: actions/cache@v4
        with:
          path: renv/python/virtualenvs/renv-python-3.10
          key: python-${{env.LINUX_VERSION}}-${{ env.pythonLocation }}-${{ hashFiles('requirements.txt') }}
          restore-keys: python-${{env.LINUX_VERSION}}-${{ env.pythonLocation }}-

      - uses: r-lib/actions/setup-renv@v2

      - uses: viash-io/viash-actions/setup@v6
          
      - name: Install Quarto
        uses: quarto-dev/quarto-actions/setup@v2
        with:
          version: 1.5.57
      
      - name: If PR, cache several directories
        if: github.event_name == 'pull_request'
        uses: actions/cache@v4
        with:
          key: quarto-${{ github.ref_name }}
          restore-keys: quarto
          path: |
            .quarto
            _docs
            _freeze

      - name: Render with Quarto
        shell: bash -l {0}  
        run: |
          quarto render --profile evaluate_code

      - name: Clean up
        shell: bash -l {0}
        run: |
          rm -rf !(_docs)
          rm .gitignore !(_docs)
          rm -rf .quarto !(_docs)
          rm .gitmodules !(_docs)
          rm .renvignore !(_docs)
          rm .Rprofile !(_docs)
          rm -rf .github !(_docs)
          mv _docs/* .
          rm -rf _docs
    
      - name: Deploy to target branch
        uses: peaceiris/actions-gh-pages@v4
        with:
          github_token: ${{ secrets.GITHUB_TOKEN }}
          publish_branch: "render/main"
          publish_dir: .