Pin scikit-learn for xgboost component (#931)

openpipelines-bio · Dec 11, 2024 · d2ef117 · d2ef117
1 parent c8b4cfb
commit d2ef117
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 1 deletion.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -16,6 +16,8 @@
 
 ## MINOR CHANGES
 
+* Pin `scikit-learn` for `labels_transfer/xgboost` to `<1.6` (PR #931).
+
 * `filter/filter_with_scrublet`: provide cleaner error message when running scrublet on an empty modality (PR #929).
 
 * Several component (cleanup): remove workaround for using being able to use shared utility functions with Nextflow Fusion (PR #920).

diff --git a/src/labels_transfer/xgboost/config.vsh.yaml b/src/labels_transfer/xgboost/config.vsh.yaml
@@ -136,7 +136,8 @@ engines:
       - type: python
         __merge__: [/src/base/requirements/scanpy.yaml, .]
         packages:
-          - xgboost~=2.0.3
+          - xgboost~=2.1.3
+          - scikit-learn<1.6
     test_setup:
       - type: python
         __merge__: [ /src/base/requirements/viashpy.yaml, .]