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Fix duplicate MINOR CHANGES section in CHANGELOG [ci skip]
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DriesSchaumont committed Oct 10, 2023
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22 changes: 10 additions & 12 deletions CHANGELOG.md
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* Several integration workflows: prevent leiden from being executed when no resolutions are provided (PR #583).

## BUG FIXES

* `transform/clr`: raise an error when CLR fails to return the requested output (PR #579).

* `correction/cellbender_remove_background`: fix missing helper functionality when using Fusion (PR #575).

* `convert/from_bdrhap_to_h5mu`: Avoid `TypeError: Can't implicitly convert non-string objects to strings` by using categorical dtypes when a string column contains NA values (PR #563).

* `qc/calculate_qc_metrics`: fix calculating mitochondrial gene related QC metrics when only or no mitochondrial genes were found (PR #564).

## MINOR CHANGES

* `dataflow/concat`: bump pandas to ~=2.1.1 and reduce memory consumption by only reading one modality into memory at a time (PR #568).

* `annotate/popv`: bump `jax` and `jaxlib` to `0.4.10`, scanpy to `1.9.4`, scvi to `1.0.3` and pin `ml-dtypes` to < 0.3.0 (PR #565).
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* `integrate/scvi`: use `midcpu` label instead of `singlecpu` (PR #561).

## BUG FIXES

* `transform/clr`: raise an error when CLR fails to return the requested output (PR #579).

* `correction/cellbender_remove_background`: fix missing helper functionality when using Fusion (PR #575).

* `convert/from_bdrhap_to_h5mu`: Avoid `TypeError: Can't implicitly convert non-string objects to strings` by using categorical dtypes when a string column contains NA values (PR #563).

* `qc/calculate_qc_metrics`: fix calculating mitochondrial gene related QC metrics when only or no mitochondrial genes were found (PR #564).

# openpipelines 0.10.1

## MINOR CHANGES
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