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integration test

integration test #162

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integration test

integration test #162

Run time

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Job Run time
list
4m 22s
build (interpret_lianapy, /home/runner/work/openpipeline/openpipeline/src/interpret/lianapy/confi...
3m 39s
build (annotate_popv, /home/runner/work/openpipeline/openpipeline/src/annotate/popv/config.vsh.ya...
15m 30s
build (demux_bcl2fastq, /home/runner/work/openpipeline/openpipeline/src/demux/bcl2fastq/config.vs...
47s
build (demux_bcl_convert, /home/runner/work/openpipeline/openpipeline/src/demux/bcl_convert/confi...
2m 17s
build (demux_cellranger_mkfastq, /home/runner/work/openpipeline/openpipeline/src/demux/cellranger...
3m 29s
build (integrate_totalvi, /home/runner/work/openpipeline/openpipeline/src/integrate/totalvi/confi...
9m 48s
build (integrate_harmonypy, /home/runner/work/openpipeline/openpipeline/src/integrate/harmonypy/c...
2m 1s
build (integrate_scanorama, /home/runner/work/openpipeline/openpipeline/src/integrate/scanorama/c...
3m 53s
build (integrate_scarches, /home/runner/work/openpipeline/openpipeline/src/integrate/scarches/con...
8m 40s
build (integrate_scvi, /home/runner/work/openpipeline/openpipeline/src/integrate/scvi/config.vsh....
9m 57s
build (compression_compress_h5mu, /home/runner/work/openpipeline/openpipeline/src/compression/com...
1m 31s
build (compression_tar_extract, /home/runner/work/openpipeline/openpipeline/src/compression/tar_e...
49s
build (correction_cellbender_remove_background, /home/runner/work/openpipeline/openpipeline/src/c...
12m 43s
build (correction_cellbender_remove_background_v0_2, /home/runner/work/openpipeline/openpipeline/...
8m 10s
build (filter_subset_h5mu, /home/runner/work/openpipeline/openpipeline/src/filter/subset_h5mu/con...
1m 32s
build (filter_filter_with_counts, /home/runner/work/openpipeline/openpipeline/src/filter/filter_w...
2m 52s
build (filter_filter_with_hvg, /home/runner/work/openpipeline/openpipeline/src/filter/filter_with...
4m 15s
build (filter_do_filter, /home/runner/work/openpipeline/openpipeline/src/filter/do_filter/config....
2m 24s
build (filter_filter_with_scrublet, /home/runner/work/openpipeline/openpipeline/src/filter/filter...
3m 46s
build (filter_remove_modality, /home/runner/work/openpipeline/openpipeline/src/filter/remove_moda...
1m 55s
build (query_cellxgene_census, /home/runner/work/openpipeline/openpipeline/src/query/cellxgene_ce...
2m 57s
build (download_sync_test_resources, /home/runner/work/openpipeline/openpipeline/src/download/syn...
2m 35s
build (download_download_file, /home/runner/work/openpipeline/openpipeline/src/download/download_...
2m 25s
build (metadata_add_id, /home/runner/work/openpipeline/openpipeline/src/metadata/add_id/config.vs...
2m 0s
build (metadata_join_uns_to_obs, /home/runner/work/openpipeline/openpipeline/src/metadata/join_un...
3m 19s
build (metadata_move_obsm_to_obs, /home/runner/work/openpipeline/openpipeline/src/metadata/move_o...
2m 27s
build (metadata_join_csv, /home/runner/work/openpipeline/openpipeline/src/metadata/join_csv/confi...
1m 36s
build (mapping_cellranger_count_split, /home/runner/work/openpipeline/openpipeline/src/mapping/ce...
2m 21s
build (mapping_cellranger_multi, /home/runner/work/openpipeline/openpipeline/src/mapping/cellrang...
2m 23s
build (mapping_star_build_reference, /home/runner/work/openpipeline/openpipeline/src/mapping/star...
4m 42s
build (mapping_samtools_sort, /home/runner/work/openpipeline/openpipeline/src/mapping/samtools_so...
2m 15s
build (mapping_cellranger_count, /home/runner/work/openpipeline/openpipeline/src/mapping/cellrang...
3m 12s
build (mapping_multi_star_to_h5mu, /home/runner/work/openpipeline/openpipeline/src/mapping/multi_...
1m 19s
build (mapping_star_align_v273a, /home/runner/work/openpipeline/openpipeline/src/mapping/star_ali...
3m 26s
build (mapping_multi_star, /home/runner/work/openpipeline/openpipeline/src/mapping/multi_star/con...
6m 40s
build (mapping_bd_rhapsody, /home/runner/work/openpipeline/openpipeline/src/mapping/bd_rhapsody/c...
2m 4s
build (mapping_htseq_count, /home/runner/work/openpipeline/openpipeline/src/mapping/htseq_count/c...
1m 34s
build (mapping_star_align, /home/runner/work/openpipeline/openpipeline/src/mapping/star_align/con...
5m 44s
build (mapping_htseq_count_to_h5mu, /home/runner/work/openpipeline/openpipeline/src/mapping/htseq...
2m 36s
build (convert_from_10xh5_to_h5mu, /home/runner/work/openpipeline/openpipeline/src/convert/from_1...
3m 27s
build (convert_from_h5mu_to_h5ad, /home/runner/work/openpipeline/openpipeline/src/convert/from_h5...
2m 37s
build (convert_from_h5ad_to_h5mu, /home/runner/work/openpipeline/openpipeline/src/convert/from_h5...
3m 6s
build (convert_from_cellranger_multi_to_h5mu, /home/runner/work/openpipeline/openpipeline/src/con...
3m 26s
build (convert_from_bdrhap_to_h5mu, /home/runner/work/openpipeline/openpipeline/src/convert/from_...
8m 48s
build (convert_from_10xmtx_to_h5mu, /home/runner/work/openpipeline/openpipeline/src/convert/from_...
2m 5s
build (convert_from_bd_to_10x_molecular_barcode_tags, /home/runner/work/openpipeline/openpipeline...
2m 8s
build (interactive_run_cirrocumulus, /home/runner/work/openpipeline/openpipeline/src/interactive/...
3m 15s
build (interactive_run_cellxgene, /home/runner/work/openpipeline/openpipeline/src/interactive/run...
3m 35s
build (labels_transfer_knn, /home/runner/work/openpipeline/openpipeline/src/labels_transfer/knn/c...
2m 38s
build (labels_transfer_xgboost, /home/runner/work/openpipeline/openpipeline/src/labels_transfer/x...
4m 24s
build (dimred_pca, /home/runner/work/openpipeline/openpipeline/src/dimred/pca/config.vsh.yaml, /h...
3m 20s
build (dimred_umap, /home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml, ...
2m 18s
build (transfer_publish, /home/runner/work/openpipeline/openpipeline/src/transfer/publish/config....
55s
build (reference_build_bdrhap_reference, /home/runner/work/openpipeline/openpipeline/src/referenc...
3m 5s
build (reference_make_reference, /home/runner/work/openpipeline/openpipeline/src/reference/make_r...
2m 16s
build (reference_build_cellranger_reference, /home/runner/work/openpipeline/openpipeline/src/refe...
1m 30s
build (convert_velocyto_to_h5mu, /home/runner/work/openpipeline/openpipeline/src/velocity/velocyt...
3m 6s
build (velocity_scvelo, /home/runner/work/openpipeline/openpipeline/src/velocity/scvelo/config.vs...
4m 0s
build (velocity_velocyto, /home/runner/work/openpipeline/openpipeline/src/velocity/velocyto/confi...
3m 53s
build (files_make_params, /home/runner/work/openpipeline/openpipeline/src/files/make_params/confi...
3m 2s
build (report_mermaid, /home/runner/work/openpipeline/openpipeline/src/report/mermaid/config.vsh....
3m 46s
build (cluster_leiden, /home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh....
3m 20s
build (dataflow_merge, /home/runner/work/openpipeline/openpipeline/src/dataflow/merge/config.vsh....
2m 16s
build (dataflow_concat, /home/runner/work/openpipeline/openpipeline/src/dataflow/concat/config.vs...
2m 57s
build (dataflow_split_modalities, /home/runner/work/openpipeline/openpipeline/src/dataflow/split_...
2m 47s
build (transform_scale, /home/runner/work/openpipeline/openpipeline/src/transform/scaling/config....
2m 17s
build (transform_delete_layer, /home/runner/work/openpipeline/openpipeline/src/transform/delete_l...
3m 11s
build (transform_regress_out, /home/runner/work/openpipeline/openpipeline/src/transform/regress_o...
3m 13s
build (transform_log1p, /home/runner/work/openpipeline/openpipeline/src/transform/log1p/config.vs...
3m 59s
build (transform_normalize_total, /home/runner/work/openpipeline/openpipeline/src/transform/norma...
3m 4s
build (transform_clr, /home/runner/work/openpipeline/openpipeline/src/transform/clr/config.vsh.ya...
3m 36s
build (neighbors_find_neighbors, /home/runner/work/openpipeline/openpipeline/src/neighbors/find_n...
3m 5s
build (neighbors_bbknn, /home/runner/work/openpipeline/openpipeline/src/neighbors/bbknn/config.vs...
3m 14s
build (process_10xh5_filter_10xh5, /home/runner/work/openpipeline/openpipeline/src/process_10xh5/...
3m 47s
build (qc_fastqc, /home/runner/work/openpipeline/openpipeline/src/qc/fastqc/config.vsh.yaml, /hom...
2m 47s
build (qc_multiqc, /home/runner/work/openpipeline/openpipeline/src/qc/multiqc/config.vsh.yaml, /h...
2m 9s
build (qc_calculate_qc_metrics, /home/runner/work/openpipeline/openpipeline/src/qc/calculate_qc_m...
1m 30s
integration_test
0s
4h 37m 47s