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Convert msec to sec for ECAT to BIDS json #230

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merged 4 commits into from
Nov 13, 2023
Merged

Convert msec to sec for ECAT to BIDS json #230

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f84876c
convert msec to sec
bilgelm Nov 10, 2023
03b5ced
Update contributors.md
bilgelm Nov 10, 2023
b19d46c
bump version
bilgelm Nov 13, 2023
62f038a
Merge branch 'main' into msec_to_sec
bendhouseart Nov 13, 2023
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1 change: 1 addition & 0 deletions contributors.md
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Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@
The following individuals have contributed to the PET2BIDS project (in alphabetical order). If you contributed and
some icons needs to be added or your name is not listed, please add it.

Murat Bilgel 💻 🐛 💡
Anthony Galassi 💻 📖 💬 🎨 💡 ⚠️
Melanie Ganz-Benjaminsen 🔍 💬 🤔 📋
Gabriel Gonzalez-Escamilla 💻 ⚠️ 🐛 👀
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3 changes: 3 additions & 0 deletions pypet2bids/pypet2bids/read_ecat.py
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Expand Up @@ -144,6 +144,9 @@ def get_header_data(header_data_map: dict, ecat_file: str = '', byte_offset: int
header[variable_name] = struct.unpack(struct_fmt, raw_bytes)
if clean and 'fill' not in variable_name.lower():
header[variable_name] = filter_bytes(header[variable_name], struct_fmt)
if 'comment' in value and 'msec' in value['comment']:
# for entries that are in msec, convert to sec for PET BIDS json
header[variable_name] /= 1000
read_head_position = relative_byte_position + byte_width

return header, read_head_position
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2 changes: 1 addition & 1 deletion pypet2bids/pyproject.toml
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@@ -1,6 +1,6 @@
[tool.poetry]
name = "pypet2bids"
version = "1.2.7"
version = "1.2.8"
description = "A python implementation of an ECAT to BIDS converter."
authors = ["anthony galassi <[email protected]>"]
license = "MIT"
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