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this is why we have CI
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bendhouseart committed Nov 27, 2023
1 parent e4b7400 commit 07f9bfa
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Showing 2 changed files with 14 additions and 7 deletions.
3 changes: 1 addition & 2 deletions Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -32,8 +32,7 @@ buildpackage:
@cd pypet2bids && poetry lock && poetry build

publish:
@cd pypet2bids
@poetry publish
@cd pypet2bids && poetry publish

installpoetry:
@cd scripts && ./installpoetry
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18 changes: 13 additions & 5 deletions scripts/python_conversions.sh
Original file line number Diff line number Diff line change
Expand Up @@ -139,7 +139,7 @@ echo "${SOURCE_FOLDER}/PhilipsGeminiPETMR-Unimedizin/reqCTAC"
dcm2niix4pet $SOURCE_FOLDER/PhilipsGeminiPETMR-Unimedizin/reqCTAC --destination-path $DESTINATION/sub-PhilipsGeminiUnimedizinMainz/pet \
--kwargs \
Manufacturer="Philips Medical Systems" \
ManufacturersModelName="PET/CT Gemini TF16"
ManufacturersModelName="PET/CT Gemini TF16" \
InstitutionName="Unimedizin, Mainz, DE" \
BodyPart="Phantom" \
Units="Bq/mL" \
Expand All @@ -156,14 +156,17 @@ ReconFilterSize=0 \
AttenuationCorrection="CTAC-SG" \
ScatterCorrectionMethod="SS-SIMUL" \
ReconstructionMethod="LOR-RAMLA" \
ReconMethodParameterValues="[1,1]"
FrameDuration=[1798] \
ReconMethodParameterValues="[1,1]" \
FrameDuration=[1798] \
ReconMethodParameterLabels="[none, none]" \
ReconMethodParameterUnits="[none, none]" \
FrameTimesStart=[0] \

echo "${SOURCE_FOLDER}/PhilipsGeminiPETMR-Unimedizin/reqNAC"
dcm2niix4pet $SOURCE_FOLDER/PhilipsGeminiPETMR-Unimedizin/reqNAC --destination-path $DESTINATION/sub-PhilipsGeminiNACUnimedizinMainz/pet \
--kwargs \
Manufacturer="Philips Medical Systems" \
ManufacturersModelName="PET/CT Gemini TF16"
ManufacturersModelName="PET/CT Gemini TF16" \
InstitutionName="Unimedizin, Mainz, DE" \
BodyPart="Phantom" \
Units="Bq/mL" \
Expand All @@ -179,8 +182,13 @@ ReconFilterType=None \
ReconFilterSize=0 \
AttenuationCorrection="None" \
ScatterCorrectionMethod="None" \
ReconstructionMethod="3D-RAMLA"
ReconstructionMethod="3D-RAMLA" \
FrameDuration=[1798] \
ReconMethodParameterLabels="[none, none]" \
ReconMethodParameterUnits="[none, none]" \
ReconMethodParameterValues="[1,1]" \
FrameTimesStart=[0] \


# Amsterdam UMC
# ---------------------------
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