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Kinase conformational modeling

This repository contains the scripts for conformational modeling of kinases using Markov state modeling. The generated data is deposited in the associated OSF project.

How to use this repository

  1. Clone repository

git clone https://github.com/openkinome/kinase-conformational-modeling

  1. Create Conda environment

conda env create -f environment.yml
conda activate kinase-conformational-modeling

Repository structure

  • notebooks
    • jupyter notebooks with a step-by-step guide to generate data
  • pics
    • python scripts to generate pictures
  • scripts
    • python scripts to generate data

Authors

David Schaller [email protected]

License

This repository is licensed under the MIT license.

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Markov state modeling for kinase conformations

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