0.29.1

Release notes for cobrapy 0.29.1

New features

Fixes

• Fixes the incorrect bounds in the CycleFree loop removal.
• Fixes reduced costs and shadow prices not available when using non-convex models.
• Fixed a bug with SBML group parsing that affects the Debian package.
• Fixed a bug where load_matlab_model would not work with numpy 2.0.

Other

• Adding a duplicate boundary reaction (with add_boundary) no longer errors, but instead just returns the existing reaction.
• Automatic detection of the external compartment now recognizes CARVEME and GAPSEQ ids and will no longer
  show a warning for models generated with those tools.

Deprecated features

Backwards incompatible changes