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TASK-6757 - Deployment: Add Jupyter Notebooks feature #2539

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149577b
Prepare new development version 3.0.0.2-SNAPSHOT
juanfeSanahuja May 29, 2024
baa1717
app: initial jupyter python notebook
imedina Sep 5, 2024
d435ec3
catalog: create cohort does not increment sample version, #TASK-6754
pfurio Sep 23, 2024
e3c6837
Merge branch 'release-3.x.x' into TASK-6754
pfurio Oct 11, 2024
4536689
Prepare next release 3.4.0-SNAPSHOT
juanfeSanahuja Oct 15, 2024
911091a
Merge branch 'release-3.x.x' into TASK-6754
pfurio Oct 17, 2024
bebdccb
catalog: check vsets can be created by study admins, #TASK-7004
pfurio Oct 17, 2024
27f5906
app: allow changing the organization id during main migration,#TASK-7118
pfurio Oct 21, 2024
abd6428
Merge branch 'release-3.0.0.x' into TASK-7118
pfurio Oct 21, 2024
1f25e7a
Adapt pom to the new SDLC #TASK-7118
juanfeSanahuja Oct 21, 2024
4a0618f
Merge branch 'release-3.0.x' into TASK-7118
juanfeSanahuja Oct 21, 2024
acac916
app: store old fqn in attributes before migration, #TASK-7118
pfurio Oct 22, 2024
d42fd7f
Merge pull request #2517 from opencb/TASK-6754
pfurio Oct 22, 2024
d2c8073
app: Ensure project.internal.datastores.variant is defined when chang…
j-coll Oct 23, 2024
bfe1925
app: Fix NPE. Add appHome to OrganizationMigration. #TASK-7118
j-coll Oct 24, 2024
85671b9
app: Rename StudyMetadata.name to match the new fqn. #TASK-7118
j-coll Oct 25, 2024
f73fbc1
app: Fix rename storage studyFqn #TASK-7118
j-coll Oct 28, 2024
d796b3d
app: Ensure OrganizationMigration is marked as "manual" to avoid auto…
j-coll Oct 28, 2024
23ff61c
Merge pull request #2523 from opencb/TASK-7118
pfurio Oct 29, 2024
f45c223
Prepare release 3.0.1
juanfeSanahuja Oct 30, 2024
e2c1261
Prepare new development version 3.0.2-SNAPSHOT
juanfeSanahuja Oct 30, 2024
345a6f2
Prepare release 3.0.2
juanfeSanahuja Oct 30, 2024
3863e5e
Prepare release 3.0.1
juanfeSanahuja Oct 30, 2024
1269834
Prepare release 3.0.1
juanfeSanahuja Oct 30, 2024
40484f0
Prepare release 3.0.1
juanfeSanahuja Oct 30, 2024
20423c3
Prepare release 3.0.2
juanfeSanahuja Oct 30, 2024
909cd78
Merge branch 'release-3.x.x' into TASK-7004
pfurio Nov 4, 2024
feedb60
Merge pull request #2520 from opencb/TASK-7004
pfurio Nov 4, 2024
80943c3
catalog: fix sync user functionality, #TASK-7187
pfurio Nov 8, 2024
be61b15
app: ensure all jobs have an attributes field, #TASK-7207
pfurio Nov 15, 2024
d30dac9
app: Always rename studies from storage when changing organization id…
j-coll Nov 15, 2024
160fccc
Merge pull request #2531 from opencb/TASK-7207
pfurio Nov 18, 2024
3e7089a
Prepare release 3.0.2
juanfeSanahuja Nov 21, 2024
76ff1e9
Prepare Port Patch 3.0.2 -> 3.4.0 Xetabase 2.0.2 -> 2.4.0 #TASK-7213
juanfeSanahuja Nov 27, 2024
f5ad886
Conflicts in opencga-app/src/main/java/org/opencb/opencga/app/migrati…
juanfeSanahuja Nov 27, 2024
3b39feb
app: fix OrgMigration merge issues, #TASK-7213
pfurio Nov 27, 2024
b4b431c
Merge pull request #2528 from opencb/TASK-7187
pfurio Dec 4, 2024
317e356
Merge branch 'release-3.x.x' into TASK-7213
juanfeSanahuja Dec 16, 2024
e2b0541
Merge pull request #2533 from opencb/TASK-7213
juanfeSanahuja Dec 16, 2024
aafd345
Added deploy-docker-python-notebook #TASK-5914
juanfeSanahuja Dec 18, 2024
3d1dfac
Added deploy-docker-python-notebook #TASK-5914
juanfeSanahuja Dec 18, 2024
a504309
Added Version to python-notebook dockerfile #TASK-6757
juanfeSanahuja Dec 18, 2024
e72ac3c
Added --no-transfer-progress in build dockers #TASK-6757
juanfeSanahuja Dec 19, 2024
fb6c37e
Merge branch 'release-3.x.x' into TASK-6757
juanfeSanahuja Dec 19, 2024
a5c25ae
Added --build-arg in deploy-docker-python-notebook #TASK-6757
juanfeSanahuja Dec 19, 2024
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catalog: check vsets can be created by study admins, #TASK-7004
pfurio committed Oct 17, 2024

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commit bebdccb928e01248699d46272c0cada5d28cc246
Original file line number Diff line number Diff line change
@@ -239,8 +239,8 @@ public void checkCanAssignOrSeePermissions(String organizationId, long studyId,

@Override
public void checkCanCreateUpdateDeleteVariableSets(String organizationId, long studyId, String userId) throws CatalogException {
if (!isAtLeastOrganizationOwnerOrAdmin(organizationId, userId)) {
throw CatalogAuthorizationException.notOrganizationOwnerOrAdmin("create, update or delete variable sets.");
if (!isAtLeastStudyAdministrator(organizationId, studyId, userId)) {
throw CatalogAuthorizationException.notStudyAdmin("create, update or delete variable sets.");
}
}